>SSE446 (SSE446Q) /CSM/SS/SSE4-B/SSE446Q.Seq.d/
XXXXXXXXXXAGAACAAGATAAACCACCAACATTTAAAAAAGTAGTTGATGATGCAGCAA
CAGCTTCTTTATGACAGAAATTATGTGGGGTTTATATATTACAATGGGATACTTTTTTAG
AAAGAAATGTACAATAAATTATCCTTTCGAAAAGGGTCCATTATCACCACGTTTCCGTGG
TGAACATGCTTTAAGAAGATATCCAACTGGTGAAGAAAGATGTATTGCATGTAAACTTTG
TGAAGCAATTTGTCCAGCTCAAGCAATTACAATTGAAGCAGAACCAAGACAAGATGGTTC
AAGAAGAACAANTCGTTACGATATCGATATGACTAAATGTATTTATTGTGGTTTCTGTCA
AGAAGCTTGTCCAGTAGATGCAATTGTTGAAGGTCCAAACTTTGAATTCACCACCGAAAC
TAGATTAGAACTTTTATATAATAAAGAGAAATTACTTGCAAATGGTGATAGATGGGAAAC
TGAAATCGCTTCAAATATTGCTGCTGATTANCTTTATCGTTAAAAAACAATTAAATAATT
AAATAATTAAATAATAATTATAAATGGTAATAATAAATAAATAAATAAATAATAAAATAA
TAAAATA

---tr*ttni*kss**CSNSFFMTEIMWGLYITMGYFFRKKCTINYPFEKGPLSPRFRGE
HALRRYPTGEERCIACKLCEAICPAQAITIEAEPRQDGSRRTXRYDIDMTKCIYCGFCQE
ACPVDAIVEGPNFEFTTETRLELLYNKEKLLANGDRWETEIASNIAADXLYR*ktik*ln
n*iiiingnnk*ink**nnki

Frame A:
---eqdkpptfkkvvddaatasl*qklcgvyilqwdtflernvq*iilskrvhyhhvsvv
nml*ediqlvkkdvlhvnfvkqfvqlkqlqlkqnqdkmvqeeqxvtisi*lnvfivvsvk
klvq*mqllkvqtlnsppkld*nfyiikrnylqmvidgklkslqilllixfivkkqlnn*
iik**l*mviink*innkiik


Frame B:
---nkinhqhlkk*lmmqqqllydrnyvgfiyyngilf*kemynklsfrkgsiittfpw*
tcfkkisnw*rkmycm*tl*snlssssnyn*srtktrwfkknxslryryd*myllwflsr
slssrcnc*rskl*ihhrn*irtfi**reitckw**mgn*nrfkycc*lxlslknn*iik
*lnnnykw***ink*iik**n


Frame C:
---tr*ttni*kss**CSNSFFMTEIMWGLYITMGYFFRKKCTINYPFEKGPLSPRFRGE
HALRRYPTGEERCIACKLCEAICPAQAITIEAEPRQDGSRRTXRYDIDMTKCIYCGFCQE
ACPVDAIVEGPNFEFTTETRLELLYNKEKLLANGDRWETEIASNIAADXLYR*ktik*ln
n*iiiingnnk*ink**nnki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE446 (SSE446Q) /CSM/SS/SSE4-B/SSE446Q.Seq.d/                        997   0.0
VSD658 (VSD658Q) /CSM/VS/VSD6-C/VSD658Q.Seq.d/                        952   0.0
VSD512 (VSD512Q) /CSM/VS/VSD5-A/VSD512Q.Seq.d/                        948   0.0
VSB623 (VSB623Q) /CSM/VS/VSB6-A/VSB623Q.Seq.d/                        946   0.0
FCL-AD18 (FCL-AD18Q) /CSM/FCL/FCL-AD/FCL-AD18Q.Seq.d/                 926   0.0
SSB302 (SSB302Q) /CSM/SS/SSB3-A/SSB302Q.Seq.d/                        632   e-180
VFB496 (VFB496Q) /CSM/VF/VFB4-D/VFB496Q.Seq.d/                         38   0.15
SLF192 (SLF192Q) /CSM/SL/SLF1-D/SLF192Q.Seq.d/                         38   0.15
AFF432 (AFF432Q) /CSM/AF/AFF4-B/AFF432Q.Seq.d/                         38   0.15
CHR851 (CHR851Q) /CSM/CH/CHR8-C/CHR851Q.Seq.d/                         36   0.60

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   890   0.0    2
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome.   121   3e-62  3
BI504866|BI504866.1 BB170010A10G05 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170010A10G05 5', mRNA sequence.   135   1e-47  3
BI517278|BI517278.1 BB160024B20H12 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160024B20H12 5', mRNA sequence.   135   5e-46  3
CF600741|CF600741.1 tac42f06.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:NUIM_HUMAN O00217 NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR ;, mRNA sequence.   109   4e-45  2
CF602357|CF602357.1 tac42f06.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:NUIM_HUMAN O00217 NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR ;, mRNA sequence.   109   4e-45  2
CD420802|CD420802.1 ku91f12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:NUIM_CAEEL Q22619 PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 23 KD SUBUNIT PRECURSOR ;, mRNA sequence.    80   8e-40  3
AL384404|AL384404.1 Medicago truncatula EST MtBC21H02R1 : T7 end of clone MtBC21H02 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    76   9e-37  3
AL384403|AL384403.1 Medicago truncatula EST MtBC21H02F1 : T3 end of clone MtBC21H02 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    76   9e-37  3
AJ496861|AJ496861.1 Medicago truncatula EST, clone mt--abc955101a01.    88   1e-36  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ407748_1(DQ407748|pid:none) Gymnadenia conopsea mitochondrial ...   275   9e-73
AC092781_19(AC092781|pid:none) Oryza sativa chromosome 3 BAC OSJ...   275   9e-73
BT053250_1(BT053250|pid:none) Medicago truncatula clone MTYFP_FQ...   274   1e-72
DQ207845_1(DQ207845|pid:none) Solanum tuberosum clone 072G11 NAD...   273   3e-72
(O21233) RecName: Full=NADH-ubiquinone oxidoreductase subunit 8;...   273   3e-72
EF086967_1(EF086967|pid:none) Picea sitchensis clone WS02740_G07...   273   4e-72
AC011808_1(AC011808|pid:none) Arabidopsis thaliana chromosome I ...   272   5e-72
(Q42599) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...   272   5e-72
BT074498_1(BT074498|pid:none) Osmerus mordax clone omor-rgc-508-...   271   1e-71
(O24143) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf...   271   1e-71

 psg: 0.75  gvh: 0.20  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for SSE446 is nuc

>SSE446Z.Seq
----------AGAACAAGATAAACCACCAACATTTAAAAAAGTAGTTGATGATGCAGCAA
CAGCTTCTTTATGACAGAAATTATGTGGGGTTTATATATTACAATGGGATACTTTTTTAG
AAAGAAATGTACAATAAATTATCCTTTCGAAAAGGGTCCATTATCACCACGTTTCCGTGG
TGAACATGCTTTAAGAAGATATCCAACTGGTGAAGAAAGATGTATTGCATGTAAACTTTG
TGAAGCAATTTGTCCAGCTCAAGCAATTACAATTGAAGCAGAACCAAGACAAGATGGTTC
AAGAAGAACAANTCGTTACGATATCGATATGACTAAATGTATTTATTGTGGTTTCTGTCA
AGAAGCTTGTCCAGTAGATGCAATTGTTGAAGGTCCAAACTTTGAATTCACCACCGAAAC
TAGATTAGAACTTTTATATAATAAAGAGAAATTACTTGCAAATGGTGATAGATGGGAAAC
TGAAATCGCTTCAAATATTGCTGCTGATTANCTTTATCGTTAAAAAACAATTAAATAATT
AAATAATTAAATAATAATTATAAATGGTAATAATAAATAAATAAATAAATAATAAAATAA
TAAAATA