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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE436
Library SS
(Link to library)
Clone ID SSE436
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1
Original site URL
Representative seq. ID SSE436P
(Link to Original site)
Representative DNA sequence 
>SSE436 (SSE436Q) /CSM/SS/SSE4-B/SSE436Q.Seq.d/
AAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAXXXXXXXXXXTTTAGTTA
CTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGNAAAAAAAAAACAA
AAAAAAAAAGAAAAAAGAAAAAATAATAATAATAATAATAATAATAATACAATAAATTTA
AATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
kkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*ksl
kkk*KIIKNKKKI---

---FSYFNLNLYCNFYKKKKKXKKNKKKKKKEKIIIIIIIIIQ*i*ikiknkpysgftnl
*k
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdlekikkf
kkkiknnkk*kknk---

---FSYFNLNLYCNFYKKKKKXKKNKKKKKKEKIIIIIIIIIQ*i*ikiknkpysgftnl
*k

Frame B:
kkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*ksl
kkk*KIIKNKKKI---

---lvtli*iyivifikkkkxkkktkkkrkkkk********ynkfk*k*rinlivglpiy
kk

Frame C:
kkkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglrenkkv*
kknkk**kikkk*---

---*ll*fksil*fl*kkkkxkkkqkkkekrknnnnnnnnntinlnknke*tl*wvyqfi
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                         78   1e-13
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                         78   1e-13
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                         78   1e-13
SSM743 (SSM743Q) /CSM/SS/SSM7-B/SSM743Q.Seq.d/                         78   1e-13
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                         78   1e-13
SSM676 (SSM676Q) /CSM/SS/SSM6-D/SSM676Q.Seq.d/                         78   1e-13
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                         78   1e-13
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                         78   1e-13
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                         78   1e-13
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                         78   1e-13
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                     78   2e-33  3
AC128298|AC128298.2 Rattus norvegicus clone CH230-399F9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   0.13   3
BM028890|BM028890.1 IpSkn01670 Skin cDNA library Ictalurus punctatus cDNA 5' similar to Ictacalcin, mRNA sequence.    32   1.4    2
AC123155|AC123155.5 Rattus norvegicus clone CH230-171I13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   1.5    2
AC023423|AC023423.5 Homo sapiens clone RP11-430C23, complete sequence.    44   1.5    1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4.    44   1.5    1
AC122904|AC122904.2 Mus musculus chromosome 1 clone RP23-46H15, complete sequence.    44   1.5    1
AL627250|AL627250.8 Human DNA sequence from clone RP13-222H17 on chromosome X Contains a novel pseudogene.    44   1.5    1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING.    44   1.5    1
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces.    44   1.5    1
dna update 2004. 2. 8
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 183,924,918
protein update 2009. 6.10
PSORT 

 psg: 0.79  gvh: 0.15  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.59  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSE436 is nuc
5' end seq. ID SSE436F
5' end seq. 
>SSE436F.Seq
AAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAA----------
Length of 5' end seq. 222
3' end seq. ID SSE436Z
3' end seq. 
>SSE436Z.Seq
----------TTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAA
AAAGNAAAAAAAAAACAAAAAAAAAAAGAAAAAAGAAAAAATAATAATAATAATAATAAT
AATAATACAATAAATTTAAATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTT
ATAAAAAA
Length of 3' end seq. 178
Connected seq. ID SSE436P
Connected seq. 
>SSE436P.Seq
AAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTATAGTTTTAAT
AAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAATAAAAAAAAA
AAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATAAAAAAGTTT
AAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAA----------TTTAGTTA
CTTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGNAAAAAAAAAACAA
AAAAAAAAAGAAAAAAGAAAAAATAATAATAATAATAATAATAATAATACAATAAATTTA
AATAAAAATAAAGAATAAACCTTATAGTGGGTTTACCAATTTATAAAAAA
Length of connected seq. 400
Full length Seq ID -
Full length Seq. -
Length of full length seq. -