SSE424
Library SS
(Link to library)
Clone ID SSE424
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03803-1
Original site URL
Representative seq. ID SSE424Z
(Link to Original site)
Representative DNA sequence
>SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/
XXXXXXXXXXTCGCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACT
TTTGAGAAAATNTCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAA
GGTGGTCAACAAATTAATAAATNTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATT
GCTCTCGCTTCTTTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAAT
AGACGTGTTAATGCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTAT
ATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAA
GGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAANTCTGCAAAT
AAAACAATCATGGAACCANCCTCTGTTCATAAAGTTAGAAGTNTCATCGATGATGAACCA
GAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAAT
AATAAAATAAAAATAAAAATAAATAAATTATAAATAAAAATANCGCATGT
sequence update 1998. 5. 2
Translated Amino Acid sequence
---AVKMTTENVAGVHLPTFEKXSEGVVSNSQELTGLSKGGQQINKXRESHIKAVEALIA
LASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYIITELDESEREEFYRLKKVQG
KKKKDLKAKEAQKEEXSANKTIMEPXSVHKVRSXIDDEPEDAELLYED*iylkkiik*nn
kikikinkl*ikixh


Translated Amino Acid sequence (All Frames)
Frame A:
---rrqndh*kccwcsftnf*enx*rcr*qftrtywsfkrwstn**xs*ith*scrsfnc
srfftncfhyig*sy*nyk*tc*cn*irs*tkt*kyhqlyyyrvg*k*krrvlqieessr
*keerfeskrstkrrkxck*nnhgtxlcs*s*kxhr**trrc*iii*rlnlfkknnkik*
*nknknk*iinknxac


Frame B:
---AVKMTTENVAGVHLPTFEKXSEGVVSNSQELTGLSKGGQQINKXRESHIKAVEALIA
LASLQTAFITLDEVIKITNRRVNAIEYVVKPKLENTISYIITELDESEREEFYRLKKVQG
KKKKDLKAKEAQKEEXSANKTIMEPXSVHKVRSXIDDEPEDAELLYED*iylkkiik*nn
kikikinkl*ikixh


Frame C:
---psk*plkmllvfiyqllrkxlkvslaihknllvfqkvvnklinxvnhtlklskl*ll
sllykllslhwmkllklqidvlmqlnt*lnqnlkipsvillqswmkvkeksftd*rkfkv
krrki*kqkkhkkkkxlqikqswnxplfiklevssmmnqkmlnyymkikfi*kk**nkii
k*k*k*inyk*kxrm


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/ 686 0.0
SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/ 686 0.0
SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/ 686 0.0
SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/ 646 0.0
SLA588 (SLA588Q) /CSM/SL/SLA5-D/SLA588Q.Seq.d/ 644 0.0
SSH196 (SSH196Q) /CSM/SS/SSH1-D/SSH196Q.Seq.d/ 601 e-171
SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/ 545 e-154
SSF460 (SSF460Q) /CSM/SS/SSF4-C/SSF460Q.Seq.d/ 448 e-125
SSB847 (SSB847Q) /CSM/SS/SSB8-B/SSB847Q.Seq.d/ 410 e-113
SSH679 (SSH679Q) /CSM/SS/SSH6-D/SSH679Q.Seq.d/ 192 4e-48

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 361 0.0 6
BI506390|BI506390.1 BB170024A20D04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20D04 5', mRNA sequence. 64 3e-12 3
AW570895|AW570895.1 ra12e05.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;contains Alu repetitive element;, mRNA sequence. 76 6e-10 1
AW588730|AW588730.1 ra03h09.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 68 2e-07 1
CD147641|CD147641.1 ML1-0007T-V150-B09-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-B09.B, mRNA sequence. 56 2e-07 3
CD147632|CD147632.1 ML1-0007T-V150-A12-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-A12.B, mRNA sequence. 56 3e-07 3
BQ836546|BQ836546.1 rf47c05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 66 6e-07 1
CA994913|CA994913.1 rg20g04.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloidogyne hapla cDNA 5' similar to SW:VATD_CAEEL P34462 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence. 66 6e-07 1
AZ540512|AZ540512.1 ENTDE86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 3e-06 3
BU720627|BU720627.1 SJM2BDG06 SJM Schistosoma japonicum cDNA, mRNA sequence. 48 2e-05 3
dna update 2004. 2. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT081771_1(BT081771|pid:none) Rana catesbeiana clone rcat-evr-50... 140 3e-32
(Q9XGM1) RecName: Full=V-type proton ATPase subunit D; ... 140 3e-32
AJ225059_1(AJ225059|pid:none) Arabidopsis thaliana mRNA for v-AT... 140 3e-32
BT079344_1(BT079344|pid:none) Esox lucius clone eluc-evq-534-179... 139 4e-32
AL928824_3(AL928824|pid:none) Zebrafish DNA sequence from clone ... 139 6e-32
AK146129_1(AK146129|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 139 6e-32
(Q5RCS8) RecName: Full=V-type proton ATPase subunit D; ... 139 7e-32
BT043620_1(BT043620|pid:none) Salmo salar clone HM4_3768 ATPase ... 139 7e-32
BC031002_1(BC031002|pid:none) Homo sapiens ATPase, H+ transporti... 139 7e-32
AK003446_1(AK003446|pid:none) Mus musculus 18-day embryo whole b... 138 1e-31
protein update 2009. 6.10
PSORT

psg: 0.85 gvh: 0.44 alm: 0.33 top: 0.43 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for SSE424 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE424Z
3' end seq.
>SSE424Z.Seq
----------TCGCCGTCAAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACT
TTTGAGAAAATNTCTGAAGGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAA
GGTGGTCAACAAATTAATAAATNTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATT
GCTCTCGCTTCTTTACAAACTGCTTTCATTACATTGGATGAAGTTATTAAAATTACAAAT
AGACGTGTTAATGCAATTGAATACGTAGTTAAACCAAAACTTGAAAATACCATCAGTTAT
ATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAA
GGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAANTCTGCAAAT
AAAACAATCATGGAACCANCCTCTGTTCATAAAGTTAGAAGTNTCATCGATGATGAACCA
GAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAAT
AATAAAATAAAAATAAAAATAAATAAATTATAAATAAAAATANCGCATGT
Length of 3' end seq. 580
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -