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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE420
Library SS
(Link to library)
Clone ID SSE420
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSE420P
(Link to Original site)
Representative DNA sequence 
>SSE420 (SSE420Q) /CSM/SS/SSE4-A/SSE420Q.Seq.d/
ATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTA
CTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAA
CTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACC
CAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTG
TCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTA
TGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAAXXXXXXXXXXGACCCACGC
GTCCGATAAAATGGAAAAGATTTACTCAAAAGGTGTTGTTTTAGGTTACAGAAGATCACA
AGTTACTCAATACCCAAANATCAGTTTAATCAAAATTGAAGGTGTTGTNTCANGTGAAGA
TTCAACTTTTTATTTAGGTAAAAAAGTTTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAA
AAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGG
TGTTGTCCAAGNTNGTTTNGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAG
AGTTATGTTATACCCATCAAANATTTAAATAAATTTTTAAAACGAAAAAAAAATTATTTG
NAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
*ngkdllkrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisqkp
nwsqnfmg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKR---

---THASDKMEKIYSKGVVLGYRRSQVTQYPXISLIKIEGVVSXEDSTFYLGKKVCLVSK
VSKSAKNPTGHKISWGKICKTHGSSGVVQXXXARNLPPKAMGAPVRVMLYPSXI*inf*n
ekkiixkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ikwkrftqkvsf*vtedhkllntqtsv*sklkvlshvkiqlfi*vkksv*sakfpnqpkt
qlvtkfhgvrfakptvvqvlsklvspetshqklwvpqselcythqtsk*ifkt---

---dprvr*ngkdllkrccfrlqkitsysipkxqfnqn*rccxx*rfnflfr*kslfsqq
sfqisqkpnwsqnfmg*dlqnpr*frccpxxfxqkpptksygcpsqsyvipikxlnkflk
rkknylxkkkk

Frame B:
*ngkdllkrcrfrlqkitsysipkhqfnqn*rcclt*rfnflfr*kslfsqqsfqisqkp
nwsqnfmg*dlqnpr*FRCCPSSFRQKPPTKSYGCPSQSYVIPIKHLNKSLKR---

---THASDKMEKIYSKGVVLGYRRSQVTQYPXISLIKIEGVVSXEDSTFYLGKKVCLVSK
VSKSAKNPTGHKISWGKICKTHGSSGVVQXXXARNLPPKAMGAPVRVMLYPSXI*inf*n
ekkiixkkkkk

Frame C:
kmekiyskgvvlgyrrsqatqypnislikiegvvsredstfylgkkvclvskvsksaknp
tghkiswgkickthgssgvvqarfarnlppkamgapvrvmlypsni*inl*ne---

---ptrpikwkrftqkvlf*vtedhkllntqxsv*sklkvlxxvkiqlfi*vkkfv*sak
fpnqpktqlvtkfhgvrfakptvvqvlskxvxpetshqklwvpqselcythqxfk*ifkt
kkklfxkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK108 (VSK108Q) /CSM/VS/VSK1-A/VSK108Q.Seq.d/                        676   0.0
VSJ792 (VSJ792Q) /CSM/VS/VSJ7-D/VSJ792Q.Seq.d/                        676   0.0
VSJ573 (VSJ573Q) /CSM/VS/VSJ5-D/VSJ573Q.Seq.d/                        676   0.0
VSJ462 (VSJ462Q) /CSM/VS/VSJ4-C/VSJ462Q.Seq.d/                        676   0.0
VSJ322 (VSJ322Q) /CSM/VS/VSJ3-A/VSJ322Q.Seq.d/                        676   0.0
VSJ132 (VSJ132Q) /CSM/VS/VSJ1-B/VSJ132Q.Seq.d/                        676   0.0
VSJ120 (VSJ120Q) /CSM/VS/VSJ1-A/VSJ120Q.Seq.d/                        676   0.0
VSI679 (VSI679Q) /CSM/VS/VSI6-D/VSI679Q.Seq.d/                        676   0.0
VSH387 (VSH387Q) /CSM/VS/VSH3-D/VSH387Q.Seq.d/                        676   0.0
VSH370 (VSH370Q) /CSM/VS/VSH3-C/VSH370Q.Seq.d/                        676   0.0
own update 2004. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC023362|AC023362.7 Mus musculus clone RP23-267G15, *** SEQUENCING IN PROGRESS ***, 21unordered pieces.    40   0.005  5
BQ834795|BQ834795.1 Po_ad_03E06_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_03E06 5' similar to BAB27124 ES CELLS CDNA, RIKEN FULL-LENGTH ENRICHE FULL INSERT, mRNA sequence.    36   0.009  2
AC101487|AC101487.1 Mus musculus clone RP23-188M5, LOW-PASS SEQUENCE SAMPLING.    34   0.040  4
AC044838|AC044838.4 Mus musculus chromosome 11 clone RP23-65B3 map 11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    34   0.041  5
AC125321|AC125321.4 Mus musculus BAC clone RP23-371B13 from chromosome 9, complete sequence.    40   0.054  5
AL606531|AL606531.6 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-104H11.    34   0.063  5
BG898839|BG898839.1 HOA22-1-G6 HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA, mRNA sequence.    42   0.073  2
AL645602|AL645602.14 Mouse DNA sequence from clone RP23-79E13 on chromosome 11.    34   0.10   5
AC104325|AC104325.28 Mus musculus clone rp23-204m3 map 15 strain C57BL/6J, complete sequence.    38   0.25   4
AP002899|AP002899.2 Oryza sativa genomic DNA, chromosome 1, PAC clone:P0456A01.    36   0.27   4
dna update 2004. 2. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB899478_1(FB899478|pid:none) Sequence 118751 from Patent WO2008...   103   5e-21
FB899466_1(FB899466|pid:none) Sequence 118739 from Patent WO2008...   103   7e-21
FJ362592_1(FJ362592|pid:none) Vernicia fordii 60S ribosomal prot...   103   7e-21
EF144854_1(EF144854|pid:none) Populus trichocarpa clone WS01119_...   103   7e-21
(Q9FZH0) RecName: Full=60S ribosomal protein L35a-2;  &AC008046_...   102   9e-21
FB899468_1(FB899468|pid:none) Sequence 118741 from Patent WO2008...   102   9e-21
(P51422) RecName: Full=60S ribosomal protein L35a-4;  &AF446895_...   102   1e-20
AY857450_1(AY857450|pid:none) Suberites domuncula L35a mRNA, com...   102   1e-20
(Q9C912) RecName: Full=60S ribosomal protein L35a-3;  &AC020579_...   102   2e-20
BT051287_1(BT051287|pid:none) Medicago truncatula clone MTYF1_F2...   101   3e-20
protein update 2009. 6.10
PSORT 

 psg: 0.70  gvh: 0.32  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SSE420 is mit
5' end seq. ID SSE420F
5' end seq. 
>SSE420F.Seq
ATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTA
CTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAA
CTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACC
CAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTG
TCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTA
TGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAA----------
Length of 5' end seq. 341
3' end seq. ID SSE420Z
3' end seq. 
>SSE420Z.Seq
----------GACCCACGCGTCCGATAAAATGGAAAAGATTTACTCAAAAGGTGTTGTTT
TAGGTTACAGAAGATCACAAGTTACTCAATACCCAAANATCAGTTTAATCAAAATTGAAG
GTGTTGTNTCANGTGAAGATTCAACTTTTTATTTAGGTAAAAAAGTTTGTTTAGTCAGCA
AAGTTTCCAAATCAGCCAAAAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCA
AAACCCACGGTAGTTCAGGTGTTGTCCAAGNTNGTTTNGCCAGAAACCTCCCACCAAAAG
CTATGGGTGCCCCAGTCAGAGTTATGTTATACCCATCAAANATTTAAATAAATTTTTAAA
ACGAAAAAAAAATTATTTGNAAAAAAAAAAAAAAAA
Length of 3' end seq. 386
Connected seq. ID SSE420P
Connected seq. 
>SSE420P.Seq
ATAAAATGGAAAAGATTTACTCAAAAGGTGTCGTTTTAGGTTACAGAAGATCACAAGCTA
CTCAATACCCAAACATCAGTTTAATCAAAATTGAAGGTGTTGTCTCACGTGAAGATTCAA
CTTTTTATTTAGGTAAAAAAGTCTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAAAAACC
CAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGGTGTTG
TCCAAGCTCGTTTCGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAGAGTTA
TGTTATACCCATCAAACATCTAAATAAATCTTTAAAACGAA----------GACCCACGC
GTCCGATAAAATGGAAAAGATTTACTCAAAAGGTGTTGTTTTAGGTTACAGAAGATCACA
AGTTACTCAATACCCAAANATCAGTTTAATCAAAATTGAAGGTGTTGTNTCANGTGAAGA
TTCAACTTTTTATTTAGGTAAAAAAGTTTGTTTAGTCAGCAAAGTTTCCAAATCAGCCAA
AAACCCAACTGGTCACAAAATTTCATGGGGTAAGATTTGCAAAACCCACGGTAGTTCAGG
TGTTGTCCAAGNTNGTTTNGCCAGAAACCTCCCACCAAAAGCTATGGGTGCCCCAGTCAG
AGTTATGTTATACCCATCAAANATTTAAATAAATTTTTAAAACGAAAAAAAAATTATTTG
NAAAAAAAAAAAAAAAA
Length of connected seq. 727
Full length Seq ID -
Full length Seq. -
Length of full length seq. -