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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE384
Library SS
(Link to library)
Clone ID SSE384
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSE384Z
(Link to Original site)
Representative DNA sequence 
>SSE384 (SSE384Q) /CSM/SS/SSE3-D/SSE384Q.Seq.d/
XXXXXXXXXXTGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCAC
TTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGNTAATGACAGATTCGTACCCA
AGTGTGAACTTCAGGGGTACGTTACTAAATCCAAAAGTCTCCCGGAACATTAAATAATTT
ATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTA
AATAAATAAATAATTAAAAAATAATCTTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
sequence update 1997.11.20
Translated Amino Acid sequence 
---EVCNWVNKNNPDAIAPLMIVENFFSELDKXNDRFVPKCELQGYVTKSKSLPEH*iiy
csnsiiinqhl*fsflkkfk*inn*kiif*n*kkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---EVCNWVNKNNPDAIAPLMIVENFFSELDKXNDRFVPKCELQGYVTKSKSLPEH*iiy
csnsiiinqhl*fsflkkfk*inn*kiif*n*kkkkkkkkkkkk


Frame B:
---kyaig*iktiqmqllhl*llkislvnwikxmtdsypsvnfrgtllnpkvsrnik*fi
vqiq*lliniynfhf*knlnk*iikk*sfkikkkkkkkkkkkk


Frame C:
---smqlgk*kqsrcncstydc*kfl**ig*x**qirtqv*tsgvry*iqkspgtlnnll
fkfnny*stfiififkki*ink*lknnllklkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE384 (SSE384Q) /CSM/SS/SSE3-D/SSE384Q.Seq.d/                        357   6e-98
SSM854 (SSM854Q) /CSM/SS/SSM8-C/SSM854Q.Seq.d/                        317   6e-86
SSM706 (SSM706Q) /CSM/SS/SSM7-A/SSM706Q.Seq.d/                        317   6e-86
SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        317   6e-86
SSM465 (SSM465Q) /CSM/SS/SSM4-C/SSM465Q.Seq.d/                        317   6e-86
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        317   6e-86
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        317   6e-86
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        317   6e-86
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        317   6e-86
SSM193 (SSM193Q) /CSM/SS/SSM1-D/SSM193Q.Seq.d/                        317   6e-86
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.    317   5e-83  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   317   5e-83  1
AC010398|AC010398.6 Homo sapiens chromosome 5 clone CTD-2125L16, WORKING DRAFT SEQUENCE, 4 ordered pieces.    48   0.073  1
AC096669|AC096669.1 Homo sapiens BAC clone RP11-380G16 from 2, complete sequence.    48   0.073  1
AC140180|AC140180.1 Homo sapiens chromosome 5 clone RP11-943M15, WORKING DRAFT SEQUENCE, 21 unordered pieces.    48   0.073  1
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42   0.28   4
AC114604|AC114604.5 Mus musculus chromosome 9 clone RP23-367L9 map 9, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.    46   0.29   1
AC139135|AC139135.5 Mus musculus chromosome 9, clone RP24-360E17, complete sequence.    46   0.29   1
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44   1.1    1
AL929113|AL929113.9 Mouse DNA sequence from clone RP23-424D23 on chromosome 2.    44   1.1    1
dna update 2004. 2. 7
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 307,995,604
protein update 2009. 6.10
PSORT 

 psg: 0.62  gvh: 0.28  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for SSE384 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE384Z
3' end seq. 
>SSE384Z.Seq
----------TGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCAC
TTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGNTAATGACAGATTCGTACCCA
AGTGTGAACTTCAGGGGTACGTTACTAAATCCAAAAGTCTCCCGGAACATTAAATAATTT
ATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTA
AATAAATAAATAATTAAAAAATAATCTTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Length of 3' end seq. 304
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -