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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE278
Library SS
(Link to library)
Clone ID SSE278
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SSE278E
(Link to Original site)
Representative DNA sequence 
>SSE278 (SSE278Q) /CSM/SS/SSE2-D/SSE278Q.Seq.d/
CTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTA
CCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAAT
TAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTAG
GTTTATTATATTTAGCTGTTGTTGCTAATTAGNGAAAAAAAAAAAAAAAAAAAAAAAAAA
AATAATAAAAATAATAAAAATAAAAACCATTAAAAATTTGTAAATTAAATGAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
ILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLG
LLYLAVVAN*xkkkkkkkkk**k**k*kplkicklne
Translated Amino Acid sequence (All Frames) 
Frame A:
lfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn*lktlltkiikslmkfkys*
vyyi*llllixekkkkkkkknnknnknknh*kfvn*mk


Frame B:
yshgfskgicklwydslfnypnvfrylskcw*trwccq*is*rhcsrk**nl**nsstlr
fiifsccc*lxkkkkkkkkkiikiikiktiknl*ik*k


Frame C:
ILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFDEIQVLLG
LLYLAVVAN*xkkkkkkkkk**k**k*kplkicklne
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/                        420   e-117
SSG310 (SSG310Q) /CSM/SS/SSG3-A/SSG310Q.Seq.d/                        420   e-117
SSE278 (SSE278Q) /CSM/SS/SSE2-D/SSE278Q.Seq.d/                        420   e-117
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/                        420   e-117
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/                        420   e-117
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/                        420   e-117
SLD713 (SLD713Q) /CSM/SL/SLD7-A/SLD713Q.Seq.d/                        420   e-117
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/                        420   e-117
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/                        412   e-114
SSB757 (SSB757Q) /CSM/SS/SSB7-C/SSB757Q.Seq.d/                        392   e-108
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds.   420  e-114  1
AX489329|AX489329.1 Sequence 6629 from Patent WO02053728.         42  2.0  2
Y10377|Y10377.1 C.albicans TOP2 gene.                             42  2.8  2
AL304971|AL304971.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone  007K03 of library H from Tetraodon nigroviridis.    42  3.7  1
AC034159|AC034159.7 Homo sapiens BAC clone RP11-344G13 from 4, complete sequence.    42  3.7  1
Z19552|Z19552.1 R.norvegicus mRNA for DNA topoisomerase II.       42  3.7  1
BJ168422|BJ168422.1 Physcomitrella patens subsp. patens cDNA clone:pph18d19, 3' end, single read.    42  3.7  1
AC111746|AC111746.4 Rattus norvegicus clone CH230-150I1, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  3.7  1
CB795875|CB795875.1 AMGNNUC:SRPB2-00272-C1-A srpb2 (10220) Rattus norvegicus cDNA clone srpb2-00272-c1 5', mRNA sequence.    42  3.7  1
Z46372|Z46372.1 R.norvegicus RNA for DNA topoisomerase II.        42  3.7  1
dna update 2003. 8.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti...   111   7e-24
CP001032_32(CP001032|pid:none) Opitutus terrae PB90-1, complete ...    32   5.3
protein update 2009. 3. 5
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.30  top: 0.63  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.26  leu: 0.53  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSE278 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSE278E
Full length Seq. 
>SSE278E.Seq
CTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAACTA
CCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGAAT
TAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTTAG
GTTTATTATATTTAGCTGTTGTTGCTAATTAGNGAAAAAAAAAAAAAAAAAAAAAAAAAA
AATAATAAAAATAATAAAAATAAAAACCATTAAAAATTTGTAAATTAAATGAAAA
Length of full length seq. 295