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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE275
Library SS
(Link to library)
Clone ID SSE275
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID SSE275F
(Link to Original site)
Representative DNA sequence 
>SSE275 (SSE275Q) /CSM/SS/SSE2-D/SSE275Q.Seq.d/
ATTACTTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTCATTTAAATAAAT
AAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCAATATTTATTTT
TAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAAAAGAAAAAAAAA
AAAAXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
llff*lhkkktynnnsfk*ikvi*IKTSNYIFNFFPIFIFRNSLKINILL*kkkkkrkkk
---
Translated Amino Acid sequence (All Frames) 
Frame A:
itfflva*kknl*q*fi*inksylnknfklyiqffpniyf*kffknkyfiikkkkkkkkk
k---


Frame B:
llff*lhkkktynnnsfk*ikvi*IKTSNYIFNFFPIFIFRNSLKINILL*kkkkkrkkk
---


Frame C:
yfffscikkklitiihlnk*klfk*klqiiysifsqylfleil*k*ifyykkkkkkekkk
---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP524 (VHP524Q) /CSM/VH/VHP5-A/VHP524Q.Seq.d/                         44   7e-04
VHP174 (VHP174Q) /CSM/VH/VHP1-D/VHP174Q.Seq.d/                         44   7e-04
VHI845 (VHI845Q) /CSM/VH/VHI8-B/VHI845Q.Seq.d/                         44   7e-04
VHI250 (VHI250Q) /CSM/VH/VHI2-C/VHI250Q.Seq.d/                         44   7e-04
VHH462 (VHH462Q) /CSM/VH/VHH4-C/VHH462Q.Seq.d/                         44   7e-04
VHH418 (VHH418Q) /CSM/VH/VHH4-A/VHH418Q.Seq.d/                         44   7e-04
VHE640 (VHE640Q) /CSM/VH/VHE6-B/VHE640Q.Seq.d/                         44   7e-04
VHA711 (VHA711Q) /CSM/VH/VHA7-A/VHA711Q.Seq.d/                         44   7e-04
SSE275 (SSE275Q) /CSM/SS/SSE2-D/SSE275Q.Seq.d/                         44   7e-04
SHK855 (SHK855Q) /CSM/SH/SHK8-C/SHK855Q.Seq.d/                         44   7e-04
own update 2002.12.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137757|AC137757.1 Mus musculus chromosome UNK clone RP23-287N15, WORKING DRAFT SEQUENCE, 6 unordered pieces.    40   10     1
dna update 2003. 8. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU016579_19(EU016579|pid:none) Uncultured marine microorganism H...    34   1.8
protein update 2009. 1.29
PSORT 

 psg: 0.92  gvh: 0.24  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSE275 is mit
5' end seq. ID SSE275F
5' end seq. 
>SSE275F.Seq
ATTACTTTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTCATTTAAATAAAT
AAAAGTTATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCAATATTTATTTT
TAGAAATTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAAAAGAAAAAAAAA
AAAA----------
Length of 5' end seq. 184
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -