NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE273
Library SS
(Link to library)
Clone ID SSE273
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11701-1
Original site URL
Representative seq. ID SSE273E
(Link to Original site)
Representative DNA sequence 
>SSE273 (SSE273Q) /CSM/SS/SSE2-D/SSE273Q.Seq.d/
AAATGGTATAAGAAAGAAGGTGTTACAGGATATATAATTAAAGAGGTTCAAACTTTTTTA
GCAACTAGTAATCCAATGTATACTCATACTAGATCAATTCCATATATTCTATCGAATGAA
TTTCATCATCATGCATTCCTTTATAGATTTGAACGTATTCGTTCAACTGTAATCGAGAAA
CTTAGTCATTCAAAATCAAAGAAATTGACATTCCTTCAATCTTGGAATGATTCACTACTA
TACATCATAGATATGGCAAAGGCTTATTCTCATCTTTACATTTTAGAACAAAGTCATCTA
GCAATTAGAAGATGTCAAGATCCTTCGACATTTACTCAATGATTTGATTAAACTATATGC
TCTATCAAATATTGAACAAGATTTTGCTTTCTTTAGAAATTGTAATTTCTTATCCTCTGG
TAAAGCATTTGCAATATCTGATGCAATCAAAGAACTATGTATTGGTATTAAACCTTATGC
ACTTCAAATCATTAATTCTGATTATAACATTTTAATTGATCCACTCTTAAATATTCCTTT
AGCAAATTTGGATGGTGATTAATTATATTAATCATATGGCTGATTGTGTTGGTGTTCCAA
AATCAAATTTATAAATAATTAAAATAATTAATAATTAATAATAATAATAATAATAATAAA
AATAATAAGTCATTTTAAAAATGATATGCGGTTTTATATCAAATGAATATAAACATTTGG
TTTATAATTTAATAATAAAAAATAAATAAATAAGAAAAAAAATTAATAAATAAATTAAAA
ATTTTAAAAAAAG
sequence update 1999. 4. 6
Translated Amino Acid sequence 
KWYKKEGVTGYIIKEVQTFLATSNPMYTHTRSIPYILSNEFHHHAFLYRFERIRSTVIEK
LSHSKSKKLTFLQSWNDSLLYIIDMAKAYSHLYILEQSHLAIRRCQDPSTFTQ*fd*tic
siky*trfcfl*kl*flilw*sicni*cnqrtmywy*tlctsnh*f*l*hfn*stlkysf
skfgw*liiliiwlivlvfqnqiyk*lk*liinnnnnnnknnksf*k*yavlyqmniniw
fii***kink*ekklinklkilkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KWYKKEGVTGYIIKEVQTFLATSNPMYTHTRSIPYILSNEFHHHAFLYRFERIRSTVIEK
LSHSKSKKLTFLQSWNDSLLYIIDMAKAYSHLYILEQSHLAIRRCQDPSTFTQ*fd*tic
siky*trfcfl*kl*flilw*sicni*cnqrtmywy*tlctsnh*f*l*hfn*stlkysf
skfgw*liiliiwlivlvfqnqiyk*lk*liinnnnnnnknnksf*k*yavlyqmniniw
fii***kink*ekklinklkilkk


Frame B:
ngirkkvlqdi*lkrfklf*qlviqcilildqfhifyrmnfiimhsfidlnvfvql*srn
lviqnqrn*hsfnlgmihyyts*iwqrliliftf*nkvi*qledvkilrhllndliklya
lsnieqdfaffrncnflssgkafaisdaikelcigikpyalqiinsdynilidpllnipl
anldgd*ly*syg*lcwcskikfinn*nn**liiiiiiikiishfkndmrfyik*i*tfg
l*fnnkk*inkkkn**in*kf*kk


Frame C:
mv*errcyriyn*rgsnffsn**snvysy*insiysie*issscipl*i*tysfncnret
*sfkikeidipsile*fttihhrygkglfsslhfrtksssn*kmsrsfdiysmi*lnyml
yqilnkillsleivisyplvkhlqylmqsknyvlvlnlmhfksliliitf*lihs*ifl*
qiwmvinyinhmadcvgvpksnl*iikiinn********k**vilkmicgfisneykhlv
ynliiknk*irkkink*iknfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE273 (SSE273Q) /CSM/SS/SSE2-D/SSE273Q.Seq.d/                       1185   0.0
VHI151 (VHI151Q) /CSM/VH/VHI1-C/VHI151Q.Seq.d/                       1122   0.0
VHB344 (VHB344Q) /CSM/VH/VHB3-B/VHB344Q.Seq.d/                       1122   0.0
CHI334 (CHI334Q) /CSM/CH/CHI3-B/CHI334Q.Seq.d/                       1122   0.0
CHG861 (CHG861Q) /CSM/CH/CHG8-C/CHG861Q.Seq.d/                       1122   0.0
CHP742 (CHP742Q) /CSM/CH/CHP7-B/CHP742Q.Seq.d/                       1019   0.0
CHH133 (CHH133Q) /CSM/CH/CHH1-B/CHH133Q.Seq.d/                        995   0.0
CHE779 (CHE779Q) /CSM/CH/CHE7-D/CHE779Q.Seq.d/                        965   0.0
SSH291 (SSH291Q) /CSM/SS/SSH2-D/SSH291Q.Seq.d/                        474   e-132
SSA102 (SSA102Q) /CSM/SS/SSA1-A/SSA102Q.Seq.d/                         42   0.013
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU773099|BU773099.1 SJEFHC03 SJE Schistosoma japonicum cDNA, mRNA sequence.    40  0.19  2
AP003934|AP003934.4 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11.    40  0.45  6
AC096334|AC096334.10 Rattus norvegicus clone CH230-88P23, WORKING DRAFT SEQUENCE, 1 ordered piece.    36  1.8  4
AC018671|AC018671.6 Homo sapiens chromosome 11 clone RP11-35O4, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38  2.0  2
AC140293|AC140293.2 Mus musculus chromosome UNK clone RP24-328A10, WORKING DRAFT SEQUENCE, 11 unordered pieces.    44  2.6  1
AF325944|AF325944.1 HIV-1 isolate Don21.34 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44  2.6  1
AF325943|AF325943.1 HIV-1 isolate Don18.51 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44  2.6  1
AF325942|AF325942.1 HIV-1 isolate Don18.33 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44  2.6  1
AF325941|AF325941.1 HIV-1 isolate Don18.26 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44  2.6  1
AF325940|AF325940.1 HIV-1 isolate Don14.43 from United Kingdom envelope glycoprotein (env) gene, partial cds.    44  2.6  1
dna update 2003. 8.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AX155021_1(AX155021|pid:none) Sequence 67 from Patent WO0138484.       54   1e-08
(O64894) RecName: Full=Acyl-coenzyme A oxidase, peroxisomal;    ...    47   5e-08
AF051203_1(AF051203|pid:none) Picea mariana acyl-CoA oxidase hom...    45   2e-07
(O65201) RecName: Full=Acyl-coenzyme A oxidase 2, peroxisomal;  ...    48   3e-07
AF057043_1(AF057043|pid:none) Arabidopsis thaliana acyl-CoA oxid...    48   3e-07
AC117081_72(AC117081|pid:none) Dictyostelium discoideum chromoso...    42   1e-06
AF202987_1(AF202987|pid:none) Petroselinum crispum acyl-CoA oxid...    44   1e-05
AK317051_1(AK317051|pid:none) Arabidopsis thaliana AT5G65110 mRN...    48   1e-05
U77053_1(U77053|pid:none) Phalaenopsis cv. 'True Lady' acyl-CoA ...    40   3e-05
U66299_1(U66299|pid:none) Phalaenopsis sp. 'True Lady' acyl-CoA ...    39   6e-05
protein update 2009. 7. 6
PSORT 

 psg: 0.78  gvh: 0.36  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 48.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSE273 is cyt
5' end seq. ID SSE273F
5' end seq. 
>SSE273F.Seq
AAATGGTATAAGAAAGAAGGTGTTACAGGATATATAATTAAAGAGGTTCAAACTTTTTTA
GCAACTAGTAATCCAATGTATACTCATACTAGATCAATTCCATATATTCTATCGAATGAA
TTTCATCATCATGCATTCCTTTATAGATTTGAACGTATTCGTTCAACTGTAATCGAGAAA
CTTAGTCATTCAAAATCAAAGAAATTGACATTCCTTCAATCTTGGAATGATTCACTACTA
TACATCATAGATATGGCAAAGGCTTATTCTCATCTTTACATTTTAGAACAAAGTCATCTA
GCAATTAGAAGATGTCAAGATCCTTCAACAAGACATTTACTCAATGATTTGATTAAACTA
TATGCTCTATCAAATATTGAACAAGATTTTGCTTTCTTTAGAAATTGTAATTTCTTATCC
TCTGGTAAAGCATTTGCAATATCTGATGCAATCAAAGAACTATGTATTGGTATTAAACCT
TATGCACTTCAAATCATTAATTCTGATTATAACATTTTAATTGATCCACTCTTAAATATT
CCTTTAGCAAATTTGGATGGTGATTA----------
Length of 5' end seq. 566
3' end seq. ID SSE273Z
3' end seq. 
>SSE273Z.Seq
----------GACATTTACTCAATGATTTGATTAAACTATATGCTCTATCAAATATTGAA
CAAGATTTTGCTTTCTTTAGAAATTGTAATTTCTTATCCTCTGGTAAAGCATTTGCAATA
TCTGATGCAATCAAAGAACTATGTATTGGTATTAAACCTTATGCACTTCAAATCATTAAT
TCTGATTATAACATTTTAATTGATCCACTCTTAAATATTCCTTTAGCAAATTTGGATGGT
GATTATATTAATCATATGGCTGATTGTGTTGGTGTTCCAAAATCAAATTTATAAATAATT
AAAATAATTAATAATTAATAATAATAATAATAATAATAAAAATAATAAGTCATTTTAAAA
ATGATATGCGGTTTTATATCAAATGAATATAAACATTTGGTTTATAATTTAATAATAAAA
AATAAATAAATAAGAAAAAAAATTAATAAATAAATTAAAAATTTTAAAAAAAGGAAAAAA
Length of 3' end seq. 470
Connected seq. ID SSE273P
Connected seq. 
>SSE273P.Seq
AAATGGTATAAGAAAGAAGGTGTTACAGGATATATAATTAAAGAGGTTCAAACTTTTTTA
GCAACTAGTAATCCAATGTATACTCATACTAGATCAATTCCATATATTCTATCGAATGAA
TTTCATCATCATGCATTCCTTTATAGATTTGAACGTATTCGTTCAACTGTAATCGAGAAA
CTTAGTCATTCAAAATCAAAGAAATTGACATTCCTTCAATCTTGGAATGATTCACTACTA
TACATCATAGATATGGCAAAGGCTTATTCTCATCTTTACATTTTAGAACAAAGTCATCTA
GCAATTAGAAGATGTCAAGATCCTTCAACAAGACATTTACTCAATGATTTGATTAAACTA
TATGCTCTATCAAATATTGAACAAGATTTTGCTTTCTTTAGAAATTGTAATTTCTTATCC
TCTGGTAAAGCATTTGCAATATCTGATGCAATCAAAGAACTATGTATTGGTATTAAACCT
TATGCACTTCAAATCATTAATTCTGATTATAACATTTTAATTGATCCACTCTTAAATATT
CCTTTAGCAAATTTGGATGGTGATTA----------GACATTTACTCAATGATTTGATTA
AACTATATGCTCTATCAAATATTGAACAAGATTTTGCTTTCTTTAGAAATTGTAATTTCT
TATCCTCTGGTAAAGCATTTGCAATATCTGATGCAATCAAAGAACTATGTATTGGTATTA
AACCTTATGCACTTCAAATCATTAATTCTGATTATAACATTTTAATTGATCCACTCTTAA
ATATTCCTTTAGCAAATTTGGATGGTGATTATATTAATCATATGGCTGATTGTGTTGGTG
TTCCAAAATCAAATTTATAAATAATTAAAATAATTAATAATTAATAATAATAATAATAAT
AATAAAAATAATAAGTCATTTTAAAAATGATATGCGGTTTTATATCAAATGAATATAAAC
ATTTGGTTTATAATTTAATAATAAAAAATAAATAAATAAGAAAAAAAATTAATAAATAAA
TTAAAAATTTTAAAAAAAGGAAAAAA
Length of connected seq. 1036
Full length Seq ID SSE273E
Full length Seq. 
>SSE273E.Seq
AAATGGTATAAGAAAGAAGGTGTTACAGGATATATAATTAAAGAGGTTCAAACTTTTTTA
GCAACTAGTAATCCAATGTATACTCATACTAGATCAATTCCATATATTCTATCGAATGAA
TTTCATCATCATGCATTCCTTTATAGATTTGAACGTATTCGTTCAACTGTAATCGAGAAA
CTTAGTCATTCAAAATCAAAGAAATTGACATTCCTTCAATCTTGGAATGATTCACTACTA
TACATCATAGATATGGCAAAGGCTTATTCTCATCTTTACATTTTAGAACAAAGTCATCTA
GCAATTAGAAGATGTCAAGATCCTTCGACATTTACTCAATGATTTGATTAAACTATATGC
TCTATCAAATATTGAACAAGATTTTGCTTTCTTTAGAAATTGTAATTTCTTATCCTCTGG
TAAAGCATTTGCAATATCTGATGCAATCAAAGAACTATGTATTGGTATTAAACCTTATGC
ACTTCAAATCATTAATTCTGATTATAACATTTTAATTGATCCACTCTTAAATATTCCTTT
AGCAAATTTGGATGGTGATTAATTATATTAATCATATGGCTGATTGTGTTGGTGTTCCAA
AATCAAATTTATAAATAATTAAAATAATTAATAATTAATAATAATAATAATAATAATAAA
AATAATAAGTCATTTTAAAAATGATATGCGGTTTTATATCAAATGAATATAAACATTTGG
TTTATAATTTAATAATAAAAAATAAATAAATAAGAAAAAAAATTAATAAATAAATTAAAA
ATTTTAAAAAAAG
Length of full length seq. 793