>SSE265 (SSE265Q) /CSM/SS/SSE2-C/SSE265Q.Seq.d/
AAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATT
CATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAA
AACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGT
TGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTA
TGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTG
TACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGC
TACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTT
TATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTC
TGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAAT
TCCAACTTGTCCACCAGCXXXXXXXXXXCTCTGCATGGAATTGGTTAAGAAAGCAAGGTG
CTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCAT
GTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAA
TTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTTNGACTCTGATGAAGCAA
TCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATT
TCCTTGCTTACAAATNTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACT
GTGTTAAACTCGTTGGTTTCGGTNCCTTAAATGGTGTTGATTACTATGCCGCTAACAACC
AATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTA
TCTCTGATGACGTTGTTGCTGGTTTNCCNTAAATAAAAATAAGTTTTAAACATTTTGTAA
TTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

KSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQFDNIKV
GQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGA
TESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTI
PTCPP---

---SAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKH
KMAKIYSXDSDEAIMQEIVTNGPVEACFTVFEDFLAYKXGVYVHTTGKDLGGHCVKLVGF
GXLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGXP*ikisfkhfvilkkkkk
kkkkkkkkkk

Frame A:
kik*kki*nesiiiiscnfihykfslcckd*ywssnqit*nypsrnlgrrtn*sir*y*s
wpiirfqekskqtktsn*il*sirssnsnffqcsnqlaklyyh*sdsksskmwfllgfwc
yrisy*sfmysq**kcsikfygygyl**n**rl*rw*cllcmelvkkarccirrmssiyn
snlsts---

---lcmelvkkarccirrmssiynsnlstssttmfkfcqhsimy*rvsikflfnlfsrqt
*ng*nlffxl**snharncy*wssrslfhcl*rfpclqxwclrphnw*rfrwslc*trwf
rxlkwc*llcr*qpmdnfmg**wnflnqtw*lryl**rccwfxxnknkf*tfcnfkkkkk
kkkkkkkkkkk

Frame B:
KSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQFDNIKV
GQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGA
TESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTI
PTCPP---

---SAWNWLRKQGAVSEECLPYTIPTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKH
KMAKIYSXDSDEAIMQEIVTNGPVEACFTVFEDFLAYKXGVYVHTTGKDLGGHCVKLVGF
GXLNGVDYYAANNQWTTSWGDNGTFLIKRGDCGISDDVVAGXP*ikisfkhfvilkkkkk
kkkkkkkkkk

Frame C:
nqikknik*eyyyh*l*fysl*iqpll*rlilvvqpnhiklsitklg*knklinsiilkl
any*vsrevqtdqnfklnlmih*efkfqllsmlkptgqivlplvrfkikqdvvlvgllvl
qnqllivyvftimkmfn*vlwiwllvmklitvvkvvmpslhgig*eskvlyqknvfhiqf
qlvhq---

---lhgig*eskvlyqknvfhiqfqlvhqlnnhv*ilstlhhvlksvnqipl*filktni
kwlkfilxtlmkqsckklllmvqsklvslslkislltnxvftstqlvki*vvtvlnslvs
vp*mvlitmplttngqlhgvimels*snvviavslmtlllvxxk*k*vlnil*f*kkkkk
kkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE265 (SSE265Q) /CSM/SS/SSE2-C/SSE265Q.Seq.d/                       2022   0.0
VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/                       1068   0.0
VFK428 (VFK428Q) /CSM/VF/VFK4-B/VFK428Q.Seq.d/                       1068   0.0
VFI438 (VFI438Q) /CSM/VF/VFI4-B/VFI438Q.Seq.d/                       1068   0.0
VFI213 (VFI213Q) /CSM/VF/VFI2-A/VFI213Q.Seq.d/                       1068   0.0
VFI120 (VFI120Q) /CSM/VF/VFI1-A/VFI120Q.Seq.d/                       1068   0.0
VFH406 (VFH406Q) /CSM/VF/VFH4-A/VFH406Q.Seq.d/                       1068   0.0
VFE574 (VFE574Q) /CSM/VF/VFE5-D/VFE574Q.Seq.d/                       1068   0.0
VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/                       1068   0.0
SSD230 (SSD230Q) /CSM/SS/SSD2-B/SSD230Q.Seq.d/                       1068   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG887746|BG887746.1 EST513597 cSTD Solanum tuberosum cDNA clone cSTD7G17 5' sequence,mRNA sequence.    54   0.004  1
CF507409|CF507409.1 USDA-FP_122000-910 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-57_C01 5', mRNA sequence.    54   0.004  1
CB292489|CB292489.1 UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence.    54   0.004  1
BE462046|BE462046.1 EST413384 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG40P1, mRNA sequence.    54   0.004  1
X81995|X81995.1 N.rustica mRNA for cathepsin B-like cysteine proteinase.    54   0.004  1
BF187220|BF187220.1 EST443507 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39D17 5' sequence, mRNA sequence.    54   0.004  1
CF828247|CF828247.1 UCRCR01_01E19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01E19, mRNA sequence.    54   0.004  1
CF828170|CF828170.1 UCRCR01_01C19_f Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa01C19, mRNA sequence.    54   0.004  1
AW650123|AW650123.1 EST328577 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI12C1 5', mRNA sequence.    54   0.004  1
AW928683|AW928683.1 EST337471 tomato flower buds 8 mm to pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOC2D20 5', mRNA sequence.    54   0.004  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QD9) RecName: Full=Cathepsin B;          EC=3.4.22.1; AltNam...   357   5e-97
AY815241_1(AY815241|pid:none) Schistosoma japonicum clone SJCHGC...   119   1e-46
FN315842_1(FN315842|pid:none) Schistosoma japonicum isolate Anhu...   118   1e-46
AY814631_1(AY814631|pid:none) Schistosoma japonicum clone SJCHGC...   115   3e-46
FN315843_1(FN315843|pid:none) Schistosoma japonicum isolate Anhu...   117   5e-46
AY814893_1(AY814893|pid:none) Schistosoma japonicum clone SJCHGC...   117   5e-46
FN315845_1(FN315845|pid:none) Schistosoma japonicum isolate Anhu...   116   5e-46
AY915831_1(AY915831|pid:none) Schistosoma japonicum SJCHGC09761 ...   116   6e-46
AY812884_1(AY812884|pid:none) Schistosoma japonicum clone SJCHGC...   116   1e-45
FN315841_1(FN315841|pid:none) Schistosoma japonicum isolate Anhu...   115   1e-45

 psg: 1.00  gvh: 0.68  alm: 0.45  top: 0.40  tms: 0.00  mit: 0.41  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear

>> prediction for SSE265 is exc

>SSE265F.Seq
AAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATT
CATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAA
AACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGT
TGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTA
TGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTG
TACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGC
TACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTT
TATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTC
TGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAAT
TCCAACTTGTCCACCAGC----------

>SSE265Z.Seq
----------CTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTC
TTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACA
CTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAAC
ATAAAATGGCTAAAATTTATTCTTTNGACTCTGATGAAGCAATCATGCAAGAAATTGTTA
CTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATNTG
GTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTT
TCGGTNCCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGG
GTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTG
CTGGTTTNCCNTAAATAAAAATAAGTTTTAAACATTTTGTAATTTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

>SSE265P.Seq
AAAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATT
CATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAA
AACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGT
TGGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTA
TGATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTG
TACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGC
TACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTT
TATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTC
TGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAAT
TCCAACTTGTCCACCAGC----------CTCTGCATGGAATTGGTTAAGAAAGCAAGGTG
CTGTATCAGAAGAATGTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCAT
GTTTAAATTTTGTCAACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAA
TTTATTCTCAAGACAAACATAAAATGGCTAAAATTTATTCTTTNGACTCTGATGAAGCAA
TCATGCAAGAAATTGTTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATT
TCCTTGCTTACAAATNTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACT
GTGTTAAACTCGTTGGTTTCGGTNCCTTAAATGGTGTTGATTACTATGCCGCTAACAACC
AATGGACAACTTCATGGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTA
TCTCTGATGACGTTGTTGCTGGTTTNCCNTAAATAAAAATAAGTTTTAAACATTTTGTAA
TTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA