>SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/
XXXXXXXXXXGGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACA
AAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTA
TGATGTAATTGGTATTGATGAAGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGAC
TTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAA
CCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCC
GTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGAT
ATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGT
GATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAA
AGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAAT
GATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATC

---i*r*h**iifsyp*qtklssfpmfnfrrc*rtstkl*cnwy**SQFFPDVVQFSEDL
ANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDI
ELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNND
Y*l*rs*lylyiinyn

Frame A:
---dititlinhf*lpmtnkiiklshvqf*kmlknkhktmm*lvlmkpifprrcti**rl
gksr*nryncrtrwylpkktipish*fsikg*iyykvncrlygllq*srlfktyrrk**y
rinwwyr*iyfrlpwllq**sk*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk**
llimkiliifvhykl*


Frame B:
---i*r*h**iifsyp*qtklssfpmfnfrrc*rtstkl*cnwy**SQFFPDVVQFSEDL
ANQGKTVIIAALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDI
ELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNND
Y*l*rs*lylyiinyn


Frame C:
---yndnidksflvthdkqnyqafpcsiledvkeqaqnydvigideanfsqtlynlvktw
qikvkpl*lph*mvpskenhsnqsli*yqrlnilqs*lpfvwfatmkppfqnvsskvmis
n*lvv*inifpfavvativikmkeivpnqakphvililkahhpllhll*tlilmii*imi
inyedpnyictl*iii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/                       1154   0.0
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                       1138   0.0
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                       1138   0.0
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                       1134   0.0
SLH838 (SLH838Q) /CSM/SL/SLH8-B/SLH838Q.Seq.d/                       1132   0.0
SSI374 (SSI374Q) /CSM/SS/SSI3-D/SSI374Q.Seq.d/                       1130   0.0
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                       1130   0.0
SSC346 (SSC346Q) /CSM/SS/SSC3-B/SSC346Q.Seq.d/                       1130   0.0
SSA406 (SSA406Q) /CSM/SS/SSA4-A/SSA406Q.Seq.d/                       1130   0.0
SSK135 (SSK135Q) /CSM/SS/SSK1-B/SSK135Q.Seq.d/                       1106   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   892   0.0    2
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   837   0.0    2
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    34   8e-04  12
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   0.002  10
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   0.005  18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           32   0.011  25
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.013  9
AZ692494|AZ692494.1 ENTJU18TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   0.023  2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.028  13
AC095121|AC095121.4 Rattus norvegicus clone CH230-7P20, *** SEQUENCING IN PROGRESS ***, 21 unordered pieces.    38   0.030  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ441416_85(DQ441416|pid:none) Variola virus strain Benin, Dahom...   126   5e-34
(P04364) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   126   5e-34
(P68563) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...   125   8e-34
AF163844_1(AF163844|pid:none) Cowpox virus thymidine kinase gene...   125   1e-33
AF163843_1(AF163843|pid:none) Ectromelia virus thymidine kinase ...   124   2e-33
K02031_1(K02031|pid:none) Variola major virus thymidine kinase g...   124   2e-33
AF012825_78(AF012825|pid:none) Ectromelia virus strain Moscow, c...   124   4e-33
AM905441_1(AM905441|pid:none) Suberites domuncula mRNA for thymi...   126   7e-33
(P04183) RecName: Full=Thymidine kinase, cytosolic;          EC=...   125   1e-32
AY335565_1(AY335565|pid:none) Synthetic construct Homo sapiens t...   125   1e-32

 psg: 0.75  gvh: 0.49  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSE242 is nuc

>SSE242Z.Seq
----------GGATATAACGATAACATTGATAAATCATTTTTAGTTACCCATGACAAACA
AAATTATCAAGCTTTCCCATGTTCAATTTTAGAAGATGTTAAAGAACAAGCACAAAACTA
TGATGTAATTGGTATTGATGAAGCCAATTTTTCCCAGACGTTGTACAATTTAGTGAAGAC
TTGGCAAATCAAGGTAAAACCGTTATAATTGCCGCACTAGATGGTACCTTCCAAAGAAAA
CCATTCCAATCAGTCATTGATTTAGTATCAAAGGCTGAATATATTACAAAGTTAACTGCC
GTTTGTATGGTTTGCTACAATGAAGCCGCCTTTTCAAAACGTATCGTCGAAAGTGATGAT
ATCGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGT
GATCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAA
AGCGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAAT
GATTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATC