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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE227
Library SS
(Link to library)
Clone ID SSE227
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SSE227E
(Link to Original site)
Representative DNA sequence 
>SSE227 (SSE227Q) /CSM/SS/SSE2-B/SSE227Q.Seq.d/
AAAATATGCTCAAAGTCAGGATGACCCAATATCTGATGATTCATTGGAAGATAGTGATCC
ATGTGAATTGGAATTACAACAACAAACAAACATAAATAATGGATTAATGATTTTCCATGA
TGCTTTATCACCAGAGGAAAATTATGACATGTATAATAAATTTAAATTTAATAATAATAA
TAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATTATTGGTAACAA
TAAAAAACAAATAAATGGTAATTACAATAATAGCAATTCATCACCTTTACAACAACAACA
CCCATCATTACAATGCGGTAATCAAAATGTACAATCACCCCAAAATCATCAATTTACACC
ACCTCAATCTTAAAATAAATAATAAGTAGTAGAAATAGTAGTAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATTAATAATAAATAAAATAAAAAATCAAATTAAAT
AAATAAATAGAAATAAAATAAAATAAAATGTATATTTATTTNTNTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
sequence update 1999. 6.10
Translated Amino Acid sequence 
KYAQSQDDPISDDSLEDSDPCELELQQQTNINNGLMIFHDALSPEENYDMYNKFKFNNNN
NNNNNNSNNNNNNNNIIGNNKKQINGNYNNSNSSPLQQQHPSLQCGNQNVQSPQNHQFTP
PQS*nk**vveivviiiiiiiiiiiiiiinnk*nkksn*ink*k*nkikcifixxkkkkk
kkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kicsksg*pni**figr**sm*igitttnkhk*windfp*cfitrgkl*hv**i*i****
***************yyw*q*ktnkw*lq**qfitfttttpiitmr*skctitpkssiyt
tsilk*iissrnssnnnnnnnnnnnnnnn***ik*kiklnk*ieik*nkmyiyxxkkkkk
kkkkkkkkkkkkkkkkkkkkk


Frame B:
KYAQSQDDPISDDSLEDSDPCELELQQQTNINNGLMIFHDALSPEENYDMYNKFKFNNNN
NNNNNNSNNNNNNNNIIGNNKKQINGNYNNSNSSPLQQQHPSLQCGNQNVQSPQNHQFTP
PQS*nk**vveivviiiiiiiiiiiiiiinnk*nkksn*ink*k*nkikcifixxkkkkk
kkkkkkkkkkkkkkkkkkkk


Frame C:
nmlkvrmtqylmihwkivihvnwnynnkqt*imd**fsmmlyhqrkimtciinlnliiii
iiiiiiviiiiiiiillvtiknk*mvitiiaihhlynnnthhynavikmynhpkiinlhh
lnlkinnk**k*****************liinkiknqik*inrnkik*nvylfx*kkkkk
kkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE227 (SSE227Q) /CSM/SS/SSE2-B/SSE227Q.Seq.d/                        301   6e-81
FC-AC20 (FC-AC20Q) /CSM/FC/FC-AC/FC-AC20Q.Seq.d/                       44   0.002
SLK409 (SLK409Q) /CSM/SL/SLK4-A/SLK409Q.Seq.d/                         38   0.15
SLD526 (SLD526Q) /CSM/SL/SLD5-B/SLD526Q.Seq.d/                         38   0.15
SLB471 (SLB471Q) /CSM/SL/SLB4-C/SLB471Q.Seq.d/                         38   0.15
SLA655 (SLA655Q) /CSM/SL/SLA6-C/SLA655Q.Seq.d/                         38   0.15
SFL494 (SFL494Q) /CSM/SF/SFL4-D/SFL494Q.Seq.d/                         38   0.15
AFG127 (AFG127Q) /CSM/AF/AFG1-B/AFG127Q.Seq.d/                         38   0.15
VSI286 (VSI286Q) /CSM/VS/VSI2-D/VSI286Q.Seq.d/                         36   0.59
VSG328 (VSG328Q) /CSM/VS/VSG3-B/VSG328Q.Seq.d/                         36   0.59
own update 2002. 8. 6
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX511302|BX511302.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.21  4
AC140109|AC140109.1 Mus musculus chromosome UNK clone RP24-156A17, WORKING DRAFT SEQUENCE, 34 unordered pieces.    40  0.43  2
AC135118|AC135118.2 Mus musculus chromosome UNK clone RP24-450N10, WORKING DRAFT SEQUENCE, 14 unordered pieces.    40  0.44  2
AC139942|AC139942.2 Mus musculus chromosome UNK clone RP23-447N11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40  0.48  2
AL031536|AL031536.2 S.pombe chromosome II cosmid c21D10.          46  0.50  1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38  0.97  6
AC131564|AC131564.1 Lytechinus variegatus clone Lv71J9, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36  1.00  3
Z54140|Z54140.2 S.pombe chromosome II cosmid c12C2.               46  1.1  2
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34  1.5  3
AC013022|AC013022.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40  1.9  3
dna update 2003. 8.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 431,759,132
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSE227 is cyt
5' end seq. ID SSE227F
5' end seq. 
>SSE227F.Seq
AAAATATGCTCAAAGTCAGGATGACCCAATATCTGATGATTCATTGGAAGATAGTGATCC
ATGTGAATTGGAATTACAACAACAAACAAACATAAATAATGGATTAATGATTTTCCATGA
TGCTTTATCACCAGAGGAAAATTATGACATGTATAATAAATTTAAATTTAATAATAATAA
TAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATTATTGGTAACAA
TAAAAAACAAATAAATGGTAATTACAATAATAGCAATTCATCACCTTTACAACAACAACA
CCCATCATTACAATGCGGTAATCAAAATGTACAATCACCCCAAAATCATCAATTTACACC
ACCTCAATCTTAAAATAAATAATAAGTAGTAGAAATAGTAGTAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATTAATAATAAATAAAATAAAAAATCAAATTAAAT
AAATAAATAGAAATAAAATAAAATAAAATGTATATTTATTTATATAAAAAAAA-------
---
Length of 5' end seq. 533
3' end seq. ID SSE227Z
3' end seq. 
>SSE227Z.Seq
----------TAAAATAAAATGTNTATTTNTTTTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 105
Connected seq. ID SSE227P
Connected seq. 
>SSE227P.Seq
AAAATATGCTCAAAGTCAGGATGACCCAATATCTGATGATTCATTGGAAGATAGTGATCC
ATGTGAATTGGAATTACAACAACAAACAAACATAAATAATGGATTAATGATTTTCCATGA
TGCTTTATCACCAGAGGAAAATTATGACATGTATAATAAATTTAAATTTAATAATAATAA
TAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATTATTGGTAACAA
TAAAAAACAAATAAATGGTAATTACAATAATAGCAATTCATCACCTTTACAACAACAACA
CCCATCATTACAATGCGGTAATCAAAATGTACAATCACCCCAAAATCATCAATTTACACC
ACCTCAATCTTAAAATAAATAATAAGTAGTAGAAATAGTAGTAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATTAATAATAAATAAAATAAAAAATCAAATTAAAT
AAATAAATAGAAATAAAATAAAATAAAATGTATATTTATTTATATAAAAAAAA-------
---TAAAATAAAATGTNTATTTNTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 638
Full length Seq ID SSE227E
Full length Seq. 
>SSE227E.Seq
AAAATATGCTCAAAGTCAGGATGACCCAATATCTGATGATTCATTGGAAGATAGTGATCC
ATGTGAATTGGAATTACAACAACAAACAAACATAAATAATGGATTAATGATTTTCCATGA
TGCTTTATCACCAGAGGAAAATTATGACATGTATAATAAATTTAAATTTAATAATAATAA
TAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATTATTGGTAACAA
TAAAAAACAAATAAATGGTAATTACAATAATAGCAATTCATCACCTTTACAACAACAACA
CCCATCATTACAATGCGGTAATCAAAATGTACAATCACCCCAAAATCATCAATTTACACC
ACCTCAATCTTAAAATAAATAATAAGTAGTAGAAATAGTAGTAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATTAATAATAAATAAAATAAAAAATCAAATTAAAT
AAATAAATAGAAATAAAATAAAATAAAATGTATATTTATTTNTNTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
Length of full length seq. 603