SSE216
Library SS
(Link to library)
Clone ID SSE216
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15871-1
Original site URL
Representative seq. ID SSE216E
(Link to Original site)
Representative DNA sequence
>SSE216 (SSE216Q) /CSM/SS/SSE2-A/SSE216Q.Seq.d/
TAAAATATTAAACTATAAATCAAAAATAAAATGAACTTTTTTCATCAATCTCATCAATTT
CAAATCCAATGACAAATTCAAAATCCAGAATATCATCATTTGGTAGTGGAACAAGTATGG
GTTCAAATTCAATTGCATGTGGTGGTGGTTGTGGAGGTGGAAGTGGTGGTATTCTTGGTT
TAGGTTTAGGATTAGGATTAAATTTATTTGGAGGTTCTAGAGGTGCTTGTGGTGGTAATA
GTGGATCTAGTAATCCTGGTAATGGCCCATGTTCTGGTGGTAAATGTTGTGGAGGTTCAT
GTTGTGGAATTTAAAATATTAAAAAATTATTAAATATATATACATTCGAAACTACACTAA
AAGTAATAAGACTTTATTTAAAAATTGGCGAATTTCAAATTATATTAAAAAAAATCAAAA
TAAATTAAATCTTTATTACCATAAAAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence
ky*tinqk*NELFSSISSISNPMTNSKSRISSFGSGTSMGSNSIACGGGCGGGSGGILGL
GLGLGLNLFGGSRGACGGNSGSSNPGNGPCSGGKCCGGSCCGI*nikkllniytfettlk
virlylkigefqiilkkikin*ifitikk


Translated Amino Acid sequence (All Frames)
Frame A:
*nikl*iknkmnffhqshqfqiq*qiqnpeyhhlvveqvwvqiqlhvvvvvevevvvflv
*v*d*d*iylevlevlvvvivdlvilvmahvlvvnvvevhvvefkilkny*iyihsklh*
k**dfi*klanfkly*kksk*iksllp*kk


Frame B:
kilnykskik*tffinlinfksndkfkiqniiiw*wnkygfkfncmwwwlwrwkwwyswf
rfririkfiwrf*rclww**wi**sw*wpmfww*mlwrfmlwnlky*kiikyiyirnytk
snktlfknwrisnyikknqnklnlyyhkkk


Frame C:
ky*tinqk*NELFSSISSISNPMTNSKSRISSFGSGTSMGSNSIACGGGCGGGSGGILGL
GLGLGLNLFGGSRGACGGNSGSSNPGNGPCSGGKCCGGSCCGI*nikkllniytfettlk
virlylkigefqiilkkikin*ifitikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE216 (SSE216Q) /CSM/SS/SSE2-A/SSE216Q.Seq.d/ 829 0.0
SSE272 (SSE272Q) /CSM/SS/SSE2-C/SSE272Q.Seq.d/ 815 0.0
CHN185 (CHN185Q) /CSM/CH/CHN1-D/CHN185Q.Seq.d/ 561 e-159
SFE868 (SFE868Q) /CSM/SF/SFE8-C/SFE868Q.Seq.d/ 531 e-150
SSF218 (SSF218Q) /CSM/SS/SSF2-A/SSF218Q.Seq.d/ 369 e-101
SSE255 (SSE255Q) /CSM/SS/SSE2-C/SSE255Q.Seq.d/ 278 7e-74
SSC164 (SSC164Q) /CSM/SS/SSC1-C/SSC164Q.Seq.d/ 248 6e-65
SSF112 (SSF112Q) /CSM/SS/SSF1-A/SSF112Q.Seq.d/ 222 4e-57
CHP209 (CHP209Q) /CSM/CH/CHP2-A/CHP209Q.Seq.d/ 206 2e-52
CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/ 206 2e-52

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X16827|X16827.1 Dictyostelium discoideum 2C mRNA. 123 2e-34 4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 36 2e-06 12
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 32 4e-05 12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 44 7e-05 10
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 36 2e-04 13
AX647501|AX647501.1 Sequence 1693 from Patent EP1270724. 54 6e-04 2
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 6e-04 10
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 32 6e-04 9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 46 0.001 11
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 44 0.001 9
dna update 2003. 8.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UK7) RecName: Full=HssA/B-like protein 51; 56 5e-07
(Q54UN3) RecName: Full=HssA/B-like protein 36; 52 9e-06
(Q54UN1) RecName: Full=HssA/B-like protein 38; 52 9e-06
(Q54UM7) RecName: Full=HssA/B-like protein 41; 52 9e-06
(Q54UL4) RecName: Full=HssA/B-like protein 45; 50 2e-05
(Q54UK9) RecName: Full=HssA/B-like protein 49; 50 2e-05
(Q54UK8) RecName: Full=HssA/B-like protein 50; 50 2e-05
(Q54UL3) RecName: Full=HssA/B-like protein 46; 47 2e-04
(Q54UL0) RecName: Full=HssA/B-like protein 48; 46 5e-04
(Q54UM6) RecName: Full=HssA/B-like protein 42; 43 0.003
protein update 2009. 3. 5
PSORT

psg: 0.75 gvh: 0.58 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.50 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSE216 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSE216E
Full length Seq.
>SSE216E.Seq
TAAAATATTAAACTATAAATCAAAAATAAAATGAACTTTTTTCATCAATCTCATCAATTT
CAAATCCAATGACAAATTCAAAATCCAGAATATCATCATTTGGTAGTGGAACAAGTATGG
GTTCAAATTCAATTGCATGTGGTGGTGGTTGTGGAGGTGGAAGTGGTGGTATTCTTGGTT
TAGGTTTAGGATTAGGATTAAATTTATTTGGAGGTTCTAGAGGTGCTTGTGGTGGTAATA
GTGGATCTAGTAATCCTGGTAATGGCCCATGTTCTGGTGGTAAATGTTGTGGAGGTTCAT
GTTGTGGAATTTAAAATATTAAAAAATTATTAAATATATATACATTCGAAACTACACTAA
AAGTAATAAGACTTTATTTAAAAATTGGCGAATTTCAAATTATATTAAAAAAAATCAAAA
TAAATTAAATCTTTATTACCATAAAAAAAAA
Length of full length seq. 451