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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE215
Library SS
(Link to library)
Clone ID SSE215
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11350-1
Original site URL
Representative seq. ID SSE215P
(Link to Original site)
Representative DNA sequence 
>SSE215 (SSE215Q) /CSM/SS/SSE2-A/SSE215Q.Seq.d/
GAAATATCTATTTTTAATAGTTTTTTTATTTTTTATTTTTTTTTTTATTTATTTATATTT
AGATAAAGAAGCGTCATATATGGTATTTAAATAAGAAAAAATAAAAGAAAAAAATAAAAA
TAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAXXXXXXXXXXCCG
TCGCATTACCAATCCTACCANTGATTGANGTCATTACCATTTGGTTATTTGTTGGTTTCC
CTTTGACCGTCGTTGGTGGTATCGCAGGTCGTAGATTATCAGAAAACTTTGAAGCACCAT
GTCGTACAAAGAATTTCCCAAGAGAAGTCCCACCAATTCAATGGTATCGTCGTTTACCAT
GTCAAATTTTAATCGCTGGTTTCTTACCATTTAGTGCCATTTACATAGAGTTGTTTTACA
TTTTCAATAGCGTTTGGGGCCATTCTACCTACACGCTCTATGGTATCCTTTGTTTGGTCT
TTTTAATTCTTATCAATGTCACCGTGTGTATCACCGTTGCCCTAACTTACTTCCAACTCT
CAATGGAAGATCATAAATGGTGGTGGAATAGTTTCATCAATGGCGGCTCCACTGTTGTTT
TCATCTACATGTACAGTATCTACTACTACTATTATATCTCTCATATGTATGGTTTACTTC
AAGCAACTTTCTACTTTACCTACATGTTGATCGTTTGCTTCTTCTTCTTTATTCTTTTAG
GTACAGTTGGTTTCTACAGTTCTTTAATTTTTGTTAAAAGAATTTATAGAAATTTGAAAT
CTGACTAAAATC
sequence update 1999. 1.18
Translated Amino Acid sequence 
kylflivflffifffiylyldkeasymvfk*EKIKEKNKNKKKKKKKKKKEKKKK---

---VALPILPXIXVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYR
RLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTY
FQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFF
ILLGTVGFYSSLIFVKRIYRNLKSD*n
Translated Amino Acid sequence (All Frames) 
Frame A:
eisifnsffifyfffylfifr*rsviygi*irknkrkk*k*kekkkkkkkrkkkk---

---pshyqsyx*lxslpfgyllvsl*pslvvsqvvdyqktlkhhvvqrisqekshqfngi
vvyhvkf*slvsyhlvpft*scftfsiafgailptrsmvsfvwsf*flsmspcvsplp*l
tsnsqwkiingggivssmaapllfsstctvstttiislicmvyfkqlstlptc*sfasss
lff*vqlvstvl*fllkefiei*nltki

Frame B:
kylflivflffifffiylyldkeasymvfk*EKIKEKNKNKKKKKKKKKKEKKKK---

---rritnptxd*xhyhlvicwfpfdrrwwyrrs*iirkl*stmsykefpkrsptnsmvs
sftmsnfnrwflti*chlhrvvlhfq*rlgpfylhalwyplfglfnsyqchrvyhrcpnl
lptlngrs*mvve*fhqwrlhccfhlhvqylllllylsyvwftssnfllylhvdrlllll
ysfryswflqffnfc*knl*kfei*lk

Frame C:
niyf**ffyflffflfiyi*ikkrhiwylnkkk*kkkikikrkkkkkkkkkkkkk---

---VALPILPXIXVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYR
RLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTY
FQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFF
ILLGTVGFYSSLIFVKRIYRNLKSD*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE215 (SSE215Q) /CSM/SS/SSE2-A/SSE215Q.Seq.d/                       1207   0.0
SLG128 (SLG128Q) /CSM/SL/SLG1-B/SLG128Q.Seq.d/                       1185   0.0
SSH479 (SSH479Q) /CSM/SS/SSH4-D/SSH479Q.Seq.d/                       1066   0.0
SFE312 (SFE312Q) /CSM/SF/SFE3-A/SFE312Q.Seq.d/                       1066   0.0
VSJ111 (VSJ111Q) /CSM/VS/VSJ1-A/VSJ111Q.Seq.d/                       1031   0.0
VHG416 (VHG416Q) /CSM/VH/VHG4-A/VHG416Q.Seq.d/                       1029   0.0
AHG556 (AHG556Q) /CSM/AH/AHG5-C/AHG556Q.Seq.d/                       1017   0.0
SSL867 (SSL867Q) /CSM/SS/SSL8-C/SSL867Q.Seq.d/                        971   0.0
VFL449 (VFL449Q) /CSM/VF/VFL4-C/VFL449Q.Seq.d/                        795   0.0
SSL868 (SSL868Q) /CSM/SS/SSL8-C/SSL868Q.Seq.d/                        793   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1199   0.0    1
AY387646|AY387646.1 Dictyostelium discoideum Phg1B (phg1b) gene, complete cds.  1191   0.0    1
AJ507828|AJ507828.1 Dictyostelium discoideum mRNA for putative phagocytic receptor 1b  (phg1b gene).  1126   0.0    3
CF830423|CF830423.1 UCRCR01_04N03_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa04N03, mRNA sequence.    36   9e-05  4
AC006532|AC006532.5 Arabidopsis thaliana chromosome 2 clone F14H20 map CIC11A04, complete sequence.    40   2e-04  2
AY060579|AY060579.1 Arabidopsis thaliana At2g01970/F14H20.4 mRNA sequence.    40   2e-04  2
AY058869|AY058869.1 Arabidopsis thaliana At2g01970/F14H20.4 mRNA, complete cds.    40   2e-04  2
BU636652|BU636652.1 002B07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence.    40   2e-04  2
CB260308|CB260308.1 79-E9623-013-004-M20-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA clone MPIZp770M204Q 5-PRIME, mRNA sequence.    40   2e-04  2
AV543040|AV543040.1 Arabidopsis thaliana cDNA clone:RZ195d09F, 3' end.    40   2e-04  2
dna update 2004. 2. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZW0) RecName: Full=Putative phagocytic receptor 1b; AltName:...   363   4e-99
AC116977_73(AC116977|pid:none) Dictyostelium discoideum chromoso...   363   4e-99
AY387646_1(AY387646|pid:none) Dictyostelium discoideum Phg1B (ph...   363   4e-99
AJ507828_1(AJ507828|pid:none) Dictyostelium discoideum mRNA for ...   352   8e-96
EU970239_1(EU970239|pid:none) Zea mays clone 342543 transmembran...   231   3e-59
AB017069_10(AB017069|pid:none) Arabidopsis thaliana genomic DNA,...   230   4e-59
AC006917_3(AC006917|pid:none) Genomic sequence for Arabidopsis t...   229   7e-59
AC010657_15(AC010657|pid:none) Genomic sequence for Arabidopsis ...   229   7e-59
EF676288_1(EF676288|pid:none) Picea sitchensis clone WS02730_B08...   228   2e-58
AK099727_1(AK099727|pid:none) Oryza sativa Japonica Group cDNA c...   228   2e-58
protein update 2009. 6.10
PSORT 

 psg: 0.03  gvh: 0.63  alm: 0.15  top: -0.20  tms: 0.27  mit: 0.12  mip: 0.00
 nuc: 0.39  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for SSE215 is pla
5' end seq. ID SSE215F
5' end seq. 
>SSE215F.Seq
GAAATATCTATTTTTAATAGTTTTTTTATTTTTTATTTTTTTTTTTATTTATTTATATTT
AGATAAAGAAGCGTCATATATGGTATTTAAATAAGAAAAAATAAAAGAAAAAAATAAAAA
TAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA----------
Length of 5' end seq. 167
3' end seq. ID SSE215Z
3' end seq. 
>SSE215Z.Seq
----------CCGTCGCATTACCAATCCTACCANTGATTGANGTCATTACCATTTGGTTA
TTTGTTGGTTTCCCTTTGACCGTCGTTGGTGGTATCGCAGGTCGTAGATTATCAGAAAAC
TTTGAAGCACCATGTCGTACAAAGAATTTCCCAAGAGAAGTCCCACCAATTCAATGGTAT
CGTCGTTTACCATGTCAAATTTTAATCGCTGGTTTCTTACCATTTAGTGCCATTTACATA
GAGTTGTTTTACATTTTCAATAGCGTTTGGGGCCATTCTACCTACACGCTCTATGGTATC
CTTTGTTTGGTCTTTTTAATTCTTATCAATGTCACCGTGTGTATCACCGTTGCCCTAACT
TACTTCCAACTCTCAATGGAAGATCATAAATGGTGGTGGAATAGTTTCATCAATGGCGGC
TCCACTGTTGTTTTCATCTACATGTACAGTATCTACTACTACTATTATATCTCTCATATG
TATGGTTTACTTCAAGCAACTTTCTACTTTACCTACATGTTGATCGTTTGCTTCTTCTTC
TTTATTCTTTTAGGTACAGTTGGTTTCTACAGTTCTTTAATTTTTGTTAAAAGAATTTAT
AGAAATTTGAAATCTGACTAAAATC
Length of 3' end seq. 615
Connected seq. ID SSE215P
Connected seq. 
>SSE215P.Seq
GAAATATCTATTTTTAATAGTTTTTTTATTTTTTATTTTTTTTTTTATTTATTTATATTT
AGATAAAGAAGCGTCATATATGGTATTTAAATAAGAAAAAATAAAAGAAAAAAATAAAAA
TAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA----------CCG
TCGCATTACCAATCCTACCANTGATTGANGTCATTACCATTTGGTTATTTGTTGGTTTCC
CTTTGACCGTCGTTGGTGGTATCGCAGGTCGTAGATTATCAGAAAACTTTGAAGCACCAT
GTCGTACAAAGAATTTCCCAAGAGAAGTCCCACCAATTCAATGGTATCGTCGTTTACCAT
GTCAAATTTTAATCGCTGGTTTCTTACCATTTAGTGCCATTTACATAGAGTTGTTTTACA
TTTTCAATAGCGTTTGGGGCCATTCTACCTACACGCTCTATGGTATCCTTTGTTTGGTCT
TTTTAATTCTTATCAATGTCACCGTGTGTATCACCGTTGCCCTAACTTACTTCCAACTCT
CAATGGAAGATCATAAATGGTGGTGGAATAGTTTCATCAATGGCGGCTCCACTGTTGTTT
TCATCTACATGTACAGTATCTACTACTACTATTATATCTCTCATATGTATGGTTTACTTC
AAGCAACTTTCTACTTTACCTACATGTTGATCGTTTGCTTCTTCTTCTTTATTCTTTTAG
GTACAGTTGGTTTCTACAGTTCTTTAATTTTTGTTAAAAGAATTTATAGAAATTTGAAAT
CTGACTAAAATC
Length of connected seq. 782
Full length Seq ID -
Full length Seq. -
Length of full length seq. -