>SSE209 (SSE209Q) /CSM/SS/SSE2-A/SSE209Q.Seq.d/
XXXXXXXXXXGGAATCATCACTGATGCTTGCCCAGTTTATGCCCCATTCTTTGGTGCTAT
GGGTGTCACAGCTGCTTTAGTTTTCACAGTTATGGGTGCCGCTTATGGTACTGCTAAAGC
CTCTGTTGGTATTTCAAATATGGGTGTTATGAAACCAGATCTTGTAATTAAAGCTTTCAT
TCCAGTTATTTTTGCTGGTGTTATTGCTATCTATGGTCTTATTATTTGTGTTATTCTCGT
CGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATCTTTCACTGATTTAGGTGC
TGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGCTATTGGTATTGTTGGTGA
CTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGTTATTATGATGCTTATCCT
TATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGGTATTTTATTATCATCTGT
CTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAACAGTGGTAACGTTATTGG
TAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAAATAAATAAATAAAAAT
AAACAAAAAAAAAATTTCTAAATAAA

---IITDACPVYAPFFGAMGVTAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIP
VIFAGVIAIYGLIICVILVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDS
GVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGK
N*ial*knnk*y*nk*ikinkkkisk*

Frame A:
---esslmlaqfmphslvlwvsqll*fsqlwvplmvllkpllvfqiwvl*nqil*lklsf
qlfllvlllsmvllfvlfssvvsnqmptip**nlsli*vlv*lsvsvvlllvwllvllvt
lvlelsvnnqnytll*clslfslkllvymv*llvfyyhlsqipiaqvkl*fh*tvvtllv
ktk*lykktinnikink*k*tkkkflnk


Frame B:
---nhh*clpslcpilwcygchscfsfhsygcrlwyc*slcwyfkygcyetrscn*sfhs
syfcwcycylwsyylcysrrwyqtkcqlylneifh*frcwfncrslwsccwygywycw*l
wc*sfrsttkiiryydaypyfl*sswfiwfnywyfiiiclryllprssfssikqw*ryw*
klnsfikkq*iilk*inknkqkknf*i


Frame C:
---IITDACPVYAPFFGAMGVTAALVFTVMGAAYGTAKASVGISNMGVMKPDLVIKAFIP
VIFAGVIAIYGLIICVILVGGIKPNANYTLMKSFTDLGAGLTVGLCGLAAGMAIGIVGDS
GVRAFGQQPKLYVIMMLILIFSEALGLYGLIIGILLSSVSDTYCPGQALVPLNSGNVIGK
N*ial*knnk*y*nk*ikinkkkisk*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE209 (SSE209Q) /CSM/SS/SSE2-A/SSE209Q.Seq.d/                       1086   0.0
SSM619 (SSM619Q) /CSM/SS/SSM6-A/SSM619Q.Seq.d/                       1084   0.0
SSK860 (SSK860Q) /CSM/SS/SSK8-C/SSK860Q.Seq.d/                       1084   0.0
SSG893 (SSG893Q) /CSM/SS/SSG8-D/SSG893Q.Seq.d/                       1084   0.0
SSF447 (SSF447Q) /CSM/SS/SSF4-B/SSF447Q.Seq.d/                       1084   0.0
SSF383 (SSF383Q) /CSM/SS/SSF3-D/SSF383Q.Seq.d/                       1084   0.0
SSE863 (SSE863Q) /CSM/SS/SSE8-C/SSE863Q.Seq.d/                       1084   0.0
SHH420 (SHH420Q) /CSM/SH/SHH4-A/SHH420Q.Seq.d/                       1084   0.0
FC-AB01 (FC-AB01Q) /CSM/FC/FC-AB/FC-AB01Q.Seq.d/                     1084   0.0
AHN514 (AHN514Q) /CSM/AH/AHN5-A/AHN514Q.Seq.d/                       1084   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.  1084   0.0    1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1049   0.0    2
CF081691|CF081691.1 QHL14B02.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL14B02, mRNA sequence.    76   5e-15  2
U02877|U02877.1 Candida tropicalis vacuolar ATPase subunit c gene, complete cds.    60   1e-14  4
BE202832|BE202832.1 EST402854 KV1 Medicago truncatula cDNA clone pKV1-3M16, mRNA sequence.    68   1e-13  3
BF003360|BF003360.1 EST431858 KV1 Medicago truncatula cDNA clone pKV1-5F23, mRNA sequence.    68   1e-13  3
AW980808|AW980808.1 EST391961 GVN Medicago truncatula cDNA clone pGVN-58D18, mRNA sequence.    68   2e-13  3
BF635761|BF635761.1 NF007A03DT1F1018 Drought Medicago truncatula cDNA clone NF007A03DT 5', mRNA sequence.    68   2e-13  3
BE203450|BE203450.1 EST403472 KV1 Medicago truncatula cDNA clone pKV1-5F21, mRNA sequence.    68   2e-13  3
CA990137|CA990137.1 EST643645 GESD Medicago truncatula cDNA clone GESD-27N3, mRNA sequence.    68   2e-13  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...   289   4e-77
(Q24808) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   167   2e-40
(Q24810) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   166   6e-40
CU640366_298(CU640366|pid:none) Podospora anserina genomic DNA c...   157   2e-37
(Q26250) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   151   1e-35
(Q17046) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...   151   1e-35
AM920433_163(AM920433|pid:none) Penicillium chrysogenum Wisconsi...   151   1e-35
BT077411_1(BT077411|pid:none) Lepeophtheirus salmonis clone lsal...   150   2e-35
AB069689_1(AB069689|pid:none) Aspergillus oryzae vmaC gene for v...   150   3e-35
AY343324_1(AY343324|pid:none) Apis mellifera vacuolar H+ ATP syn...   150   3e-35

 psg: 0.75  gvh: 0.55  alm: 0.14  top: 0.60  tms: 0.27  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSE209 is end

>SSE209Z.Seq
----------GGAATCATCACTGATGCTTGCCCAGTTTATGCCCCATTCTTTGGTGCTAT
GGGTGTCACAGCTGCTTTAGTTTTCACAGTTATGGGTGCCGCTTATGGTACTGCTAAAGC
CTCTGTTGGTATTTCAAATATGGGTGTTATGAAACCAGATCTTGTAATTAAAGCTTTCAT
TCCAGTTATTTTTGCTGGTGTTATTGCTATCTATGGTCTTATTATTTGTGTTATTCTCGT
CGGTGGTATCAAACCAAATGCCAACTATACCTTAATGAAATCTTTCACTGATTTAGGTGC
TGGTTTAACTGTCGGTCTCTGTGGTCTTGCTGCTGGTATGGCTATTGGTATTGTTGGTGA
CTCTGGTGTTAGAGCTTTCGGTCAACAACCAAAATTATACGTTATTATGATGCTTATCCT
TATTTTCTCTGAAGCTCTTGGTTTATATGGTTTAATTATTGGTATTTTATTATCATCTGT
CTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCATTAAACAGTGGTAACGTTATTGG
TAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAAATAAATAAATAAAAAT
AAACAAAAAAAAAATTTCTAAATAAA