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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE207
Library SS
(Link to library)
Clone ID SSE207
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SSE207E
(Link to Original site)
Representative DNA sequence 
>SSE207 (SSE207Q) /CSM/SS/SSE2-A/SSE207Q.Seq.d/
ATTATATTTATTTTAAAAAGAATTAAAAAAAATAAAATAAAATAAAAAAGGAAATATAAA
AGAAATTAAAAAAAGAAAATGTCTTTTAAAGCTATAATACTATTGTGTTTGATAGCACTT
TGTGCTGAAAAAGCTTTAGGTGCAATTTTTGAATTAAAAATTGAAACACCTGATGTACAA
TTTTGCACTATATCAAATGGAACCTATAATGTTGATTTTAGTGGTCCATTCTTTAGATTT
TCCGATTCATCTTTAGCAGAAGAATATATAGTTAGAGACGTAGTAGGTGGATTTTATTAT
ATTAATCAAGCAGGAAGAAATGCCAGATTTCACTTAGACGAATTCATTTACAATTCTCTC
TATGGTAATAATTCCTATGAATATGCAACCAACTCAACCCTTGCATGTGCTTCTAATATG
GCAACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATGCACTTTGG
TAGCNNCATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACCTGCATCTGTTT
CAGACTGTGAATNCCAAGGTTCAAGTGCATCCTGATTGCTCAGCAATTAATATGAAAGGT
TTAATGGGCGACTGGAAACACAAAGTCGTAGAATTTATACCTCCAACTATTGATATACAT
CCAGGTGGTTTAGTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAATCGGACTCTTATTG
GTAATCGGTTCATTAGGTGTCATCATGAAATTCCAAAATAAATAAATTATCTTTTAACTA
GAAGTAGAAAAGTAATGAAAAATAGATAAAAAAAAAAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAACAAAAAAAAGTGTAAATAT
ACTATAAATAGCTTATCATATTAATGTAATCATAATAAAACCAGTCGAAAATTTTTTAAA
GAACAAAACAAAATAAAAAAAATAAAAAAAATCATCACCAAGTCTTTTTTATAT
sequence update 1999. 4. 6
Translated Amino Acid sequence 
iifilkrikknkik*krkykrn*KKKMSFKAIILLCLIALCAEKALGAIFELKIETPDVQ
FCTISNGTYNVDFSGPFFRFSDSSLAEEYIVRDVVGGFYYINQAGRNARFHLDEFIYNSL
YGNNSYEYATNSTLACASNMATYMCSYTFVGTTPPCNALW*xhvqmdllmevklfhlhlf
qtvnxkvqvhpdcsainmkglmgdwkhkvvefipptidihpgglvrgsllgfgvliglll
vigslgvimkfqnk*iif*levek**kidkkknnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnkkkckytinslsy*cnhnktsrkffkeqnkikkikkiitksfly
Translated Amino Acid sequence (All Frames) 
Frame A:
iifilkrikknkik*krkykrn*KKKMSFKAIILLCLIALCAEKALGAIFELKIETPDVQ
FCTISNGTYNVDFSGPFFRFSDSSLAEEYIVRDVVGGFYYINQAGRNARFHLDEFIYNSL
YGNNSYEYATNSTLACASNMATYMCSYTFVGTTPPCNALW*xhvqmdllmevklfhlhlf
qtvnxkvqvhpdcsainmkglmgdwkhkvvefipptidihpgglvrgsllgfgvliglll
vigslgvimkfqnk*iif*levek**kidkkknnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnkkkckytinslsy*cnhnktsrkffkeqnkikkikkiitksfly


Frame B:
lylf*kelkkik*nkkgnikeikkrkcllkl*yycv**hfvlkkl*vqfln*klkhlmyn
falyqmepimlilvvhsldfpihl*qkni*let**vdfiilikqeempdft*tnsftils
mviipmnmqptqplhvlliwqhicavtlllelhlhvmhfgsxmcrwiylwrssystcicf
rl*xprfkciliaqqli*kv*watgntks*nlylqlliyiqvv**edlc*vlvf*sdsyw
*svh*vss*nskinklsfn*k*ksnek*ikkkiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiitkksvnil*iayhinviiikpvenflknktk*kk*kksspslfy


Frame C:
yiyfkkn*kk*nkikkei*kklkkenvf*syntivfdstlc*ksfrcnf*ikn*nt*cti
lhyikwnl*c*f*wsil*ifrfifsrriys*rrsrwilly*ssrkkcqislrrihlqfsl
w**fl*icnqlnpcmcf*ygniyvqlhfcwnytsm*ctlvaxcadgftyggqvippasvs
dcexqgssas*llsn*yerfngrletqsrriytsny*ytsrwfskrifvrfwcfnrtlig
nrfirchheipk*inylltrsrkvmknr*kkk****************************
*************qkkv*iyyk*liilm*s**nqskif*rtkqnkknkknhhqvffi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE207 (SSE207Q) /CSM/SS/SSE2-A/SSE207Q.Seq.d/                       1435   0.0
SSC455 (SSC455Q) /CSM/SS/SSC4-C/SSC455Q.Seq.d/                       1146   0.0
SSK567 (SSK567Q) /CSM/SS/SSK5-C/SSK567Q.Seq.d/                       1051   0.0
SSM116 (SSM116Q) /CSM/SS/SSM1-A/SSM116Q.Seq.d/                        692   0.0
SSE191 (SSE191Q) /CSM/SS/SSE1-D/SSE191Q.Seq.d/                        690   0.0
SSL326 (SSL326Q) /CSM/SS/SSL3-B/SSL326Q.Seq.d/                        585   e-166
SSH375 (SSH375Q) /CSM/SS/SSH3-D/SSH375Q.Seq.d/                        577   e-163
SSB635 (SSB635Q) /CSM/SS/SSB6-B/SSB635Q.Seq.d/                        521   e-147
SSK321 (SSK321Q) /CSM/SS/SSK3-A/SSK321Q.Seq.d/                        147   4e-34
VSH852 (VSH852Q) /CSM/VS/VSH8-C/VSH852Q.Seq.d/                         38   0.27
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX218590|BX218590.1 Danio rerio genomic clone DKEY-268I14, genomic survey sequence.    36  0.20  2
AL663060|AL663060.6 Mouse DNA sequence from clone RP23-239H6 on chromosome 11.    36  0.50  6
AC116682|AC116682.2 Mus musculus clone RP24-475F22, WORKING DRAFT SEQUENCE, 13 ordered pieces.    44  0.69  4
AC084131|AC084131.3 Homo sapiens chromosome 8 clone CTC-270G24 map 8, WORKING DRAFT SEQUENCE, 5 unordered pieces.    46  0.91  1
AC129254|AC129254.3 Rattus norvegicus clone CH230-137P11, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.91  1
AC132963|AC132963.3 Rattus norvegicus clone CH230-149B4, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    46  0.91  1
AC055749|AC055749.9 Homo sapiens chromosome 3 clone RP11-440B20, WORKING DRAFT SEQUENCE, 54 unordered pieces.    46  0.91  1
AC116697|AC116697.4 Mus musculus clone RP24-444C12, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46  0.91  1
G53363|G53363.1 SHGC-81541 Human Homo sapiens STS genomic, sequence tagged site.    46  0.91  1
AQ058922|AQ058922.1 RPCI11-42L22.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-42L22, genomic survey sequence.    46  0.91  1
dna update 2003. 8.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,330,519,649
protein update 2009. 7. 6
PSORT 

 psg: 0.98  gvh: 0.68  alm: 0.46  top: 0.13  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 20.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for SSE207 is exc
5' end seq. ID SSE207F
5' end seq. 
>SSE207F.Seq
ATTATATTTATTTTAAAAAGAATTAAAAAAAATAAAATAAAATAAAAAAGGAAATATAAA
AGAAATTAAAAAAAGAAAATGTCTTTTAAAGCTATAATACTATTGTGTTTGATAGCACTT
TGTGCTGAAAAAGCTTTAGGTGCAATTTTTGAATTAAAAATTGAAACACCTGATGTACAA
TTTTGCACTATATCAAATGGAACCTATAATGTTGATTTTAGTGGTCCATTCTTTAGATTT
TCCGATTCATCTTTAGCAGAAGAATATATAGTTAGAGACGTAGTAGGTGGATTTTATTAT
ATTAATCAAGCAGGAAGAAATGCCAGATTTCACTTAGACGAATTCATTTACAATTCTCTC
TATGGTAATAATTCCTATGAATATGCAACCAACTCAACCCTTGCATGTGCTTCTAATATG
GCAACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATGCACTTTGT
GACCCAGTAGCTACATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACCTGCA
TCTGTTTCAGACTGTGAATTCCAAGGTTCAAGTGCATC----------
Length of 5' end seq. 578
3' end seq. ID SSE207Z
3' end seq. 
>SSE207Z.Seq
----------GTAGCACCATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACC
TGCATCTGTTTCAGACTGTGAATCCCAAGGTTCAAGTGCATCTGATTGCTCAGCAATTAA
TATGAAAGGTTTAATGGGCGACTGGAAACACAAAGTCGTAGAATTTATACCTCCAACTAT
TGATATACATCCAGGTGGTTTAGTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAATCGG
ACTCTTATTGGTAATCGGTTCATTAGGTGTCATCATGAAATTCCAAAATAAATAAATTAT
CTTTTAACTAGAAGTAGAAAAGTAATGAAAAATAGATAAAAAAAAAAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAAAAAAAA
GTGTAAATATACTATAAATAGCTTATCATATTAATGTAATCATAATAAAACCAGTCGAAA
ATTTTTTAAAGAACAAAACAAAATAAAAAAAATAAAAAAAATCATCACCAAGTCTTTTTT
ATATGAAAAAAAAA
Length of 3' end seq. 604
Connected seq. ID SSE207P
Connected seq. 
>SSE207P.Seq
ATTATATTTATTTTAAAAAGAATTAAAAAAAATAAAATAAAATAAAAAAGGAAATATAAA
AGAAATTAAAAAAAGAAAATGTCTTTTAAAGCTATAATACTATTGTGTTTGATAGCACTT
TGTGCTGAAAAAGCTTTAGGTGCAATTTTTGAATTAAAAATTGAAACACCTGATGTACAA
TTTTGCACTATATCAAATGGAACCTATAATGTTGATTTTAGTGGTCCATTCTTTAGATTT
TCCGATTCATCTTTAGCAGAAGAATATATAGTTAGAGACGTAGTAGGTGGATTTTATTAT
ATTAATCAAGCAGGAAGAAATGCCAGATTTCACTTAGACGAATTCATTTACAATTCTCTC
TATGGTAATAATTCCTATGAATATGCAACCAACTCAACCCTTGCATGTGCTTCTAATATG
GCAACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATGCACTTTGT
GACCCAGTAGCTACATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACCTGCA
TCTGTTTCAGACTGTGAATTCCAAGGTTCAAGTGCATC----------GTAGCACCATGT
GCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACCTGCATCTGTTTCAGACTGTGAA
TCCCAAGGTTCAAGTGCATCTGATTGCTCAGCAATTAATATGAAAGGTTTAATGGGCGAC
TGGAAACACAAAGTCGTAGAATTTATACCTCCAACTATTGATATACATCCAGGTGGTTTA
GTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAATCGGACTCTTATTGGTAATCGGTTCA
TTAGGTGTCATCATGAAATTCCAAAATAAATAAATTATCTTTTAACTAGAAGTAGAAAAG
TAATGAAAAATAGATAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAACAAAAAAAAGTGTAAATATACTATAAATAGC
TTATCATATTAATGTAATCATAATAAAACCAGTCGAAAATTTTTTAAAGAACAAAACAAA
ATAAAAAAAATAAAAAAAATCATCACCAAGTCTTTTTTATATGAAAAAAAAA
Length of connected seq. 1182
Full length Seq ID SSE207E
Full length Seq. 
>SSE207E.Seq
ATTATATTTATTTTAAAAAGAATTAAAAAAAATAAAATAAAATAAAAAAGGAAATATAAA
AGAAATTAAAAAAAGAAAATGTCTTTTAAAGCTATAATACTATTGTGTTTGATAGCACTT
TGTGCTGAAAAAGCTTTAGGTGCAATTTTTGAATTAAAAATTGAAACACCTGATGTACAA
TTTTGCACTATATCAAATGGAACCTATAATGTTGATTTTAGTGGTCCATTCTTTAGATTT
TCCGATTCATCTTTAGCAGAAGAATATATAGTTAGAGACGTAGTAGGTGGATTTTATTAT
ATTAATCAAGCAGGAAGAAATGCCAGATTTCACTTAGACGAATTCATTTACAATTCTCTC
TATGGTAATAATTCCTATGAATATGCAACCAACTCAACCCTTGCATGTGCTTCTAATATG
GCAACATATATGTGCAGTTACACTTTTGTTGGAACTACACCTCCATGTAATGCACTTTGG
TAGCNNCATGTGCAGATGGATTTACTTATGGAGGTCAAGTTATTCCACCTGCATCTGTTT
CAGACTGTGAATNCCAAGGTTCAAGTGCATCCTGATTGCTCAGCAATTAATATGAAAGGT
TTAATGGGCGACTGGAAACACAAAGTCGTAGAATTTATACCTCCAACTATTGATATACAT
CCAGGTGGTTTAGTAAGAGGATCTTTGTTAGGTTTTGGTGTTTTAATCGGACTCTTATTG
GTAATCGGTTCATTAGGTGTCATCATGAAATTCCAAAATAAATAAATTATCTTTTAACTA
GAAGTAGAAAAGTAATGAAAAATAGATAAAAAAAAAAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAACAAAAAAAAGTGTAAATAT
ACTATAAATAGCTTATCATATTAATGTAATCATAATAAAACCAGTCGAAAATTTTTTAAA
GAACAAAACAAAATAAAAAAAATAAAAAAAATCATCACCAAGTCTTTTTTATAT
Length of full length seq. 1074