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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE203
Library SS
(Link to library)
Clone ID SSE203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12218-1
Original site URL
Representative seq. ID SSE203P
(Link to Original site)
Representative DNA sequence 
>SSE203 (SSE203Q) /CSM/SS/SSE2-A/SSE203Q.Seq.d/
AGTTCTTGTTAAACAATTAATGAGTAAATCATTATTTACTATTAATTTAGATACAACTTT
AGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATTCATAGATTACCAGTAGTTGACAA
TGACGGTAATCTAAAAGGAATTATCACAGATAGAGATTTAAGATTAGCAACTGATTCACC
ATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAATTAAGACTTCACAAAGTTTCTTC
TATTATGAAACAAAATCCAGTTACTATCGAAGATTTTTCTCCAGTTGTAGAGGCAGCAAA
ATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTATTAGATAAAAAAGGTCGTTTAAT
TGGAATGGTAACAAGATCTGACCTATTGGACTTATTAATTAAAGTTTTAGAGCCAGTACC
ACCACAAAGTTAAXXXXXXXXXXCCCCCCCAAAGTTAAAANTAAAAAAAAATTNAAAAAA
AAAAAAAATANTGGGTAATTTTATTTATTTGTTTTATTTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
ssc*tine*iiiyy*frynfrcclkkfkcqfns*itss*q*r*skrnyhr*rfkisn*ft
issre**r*igkiktsqsffyyetkssyyrrffsscrgskinesykcrritrir*krsfn
wngnki*piglin*SFRASTTTKL---

---PPKLKXKKNXKKKKIXGNFIYLFYFLKKKKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
ssc*tine*iiiyy*frynfrcclkkfkcqfns*itss*q*r*skrnyhr*rfkisn*ft
issre**r*igkiktsqsffyyetkssyyrrffsscrgskinesykcrritrir*krsfn
wngnki*piglin*SFRASTTTKL---

---ppqs*x*kkixkkkkxwvilficfif*kkkkkkkkkkkkkkkkkkkkkkk

Frame B:
vlvkqlmskslftinldttldvalkslnansihrlpvvdndgnlkgiitdrdlrlatdsp
flpennedrleklrlhkvssimkqnpvtiedfspvveaaklmrvtnvgglpvldkkgrli
gmvtrsdlldllikvlepvppqs*---

---ppkvkxkkkxkkkknxg*fylfvlffkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
fllnn**vnhyllli*iql*mlp*kv*mpiqfidyq*ltmtvi*kelsqiei*d*qlihh
ffqrimkidwkn*dftkflll*nkiqllskiflql*rqqn**elqm*edypy*ikkvv*l
ew*qdltywty*lkf*sqyhhkv---

---PPKLKXKKNXKKKKIXGNFIYLFYFLKKKKKKKKKKKKKKKKKKKKKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF663 (VSF663Q) /CSM/VS/VSF6-C/VSF663Q.Seq.d/                        858   0.0
SSK710 (SSK710Q) /CSM/SS/SSK7-A/SSK710Q.Seq.d/                        858   0.0
SSF143 (SSF143Q) /CSM/SS/SSF1-B/SSF143Q.Seq.d/                        858   0.0
SSE203 (SSE203Q) /CSM/SS/SSE2-A/SSE203Q.Seq.d/                        858   0.0
SSC856 (SSC856Q) /CSM/SS/SSC8-C/SSC856Q.Seq.d/                        852   0.0
VSI609 (VSI609Q) /CSM/VS/VSI6-A/VSI609Q.Seq.d/                        839   0.0
SSD873 (SSD873Q) /CSM/SS/SSD8-D/SSD873Q.Seq.d/                        823   0.0
SSL577 (SSL577Q) /CSM/SS/SSL5-D/SSL577Q.Seq.d/                        803   0.0
SSD857 (SSD857Q) /CSM/SS/SSD8-C/SSD857Q.Seq.d/                        563   e-159
SSD251 (SSD251Q) /CSM/SS/SSD2-C/SSD251Q.Seq.d/                        561   e-159
own update 2001. 3.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX001025|BX001025.19 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-240D20.    46   5e-05  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42   5e-05  13
AL627445|AL627445.21 Mouse DNA sequence from clone RP23-81D2 on chromosome 11.    36   1e-04  8
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    46   1e-04  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.001  11
AC137015|AC137015.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    44   0.001  2
AE016955|AE016955.1 Enterococcus faecalis V583, section 9 of 11 of the complete genome.    34   0.002  13
BX294006|BX294006.4 Zebrafish DNA sequence from clone CH211-145M1 in linkage group 8.    48   0.002  6
BX323834|BX323834.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-48B5.    48   0.002  6
AC061986|AC061986.3 Homo sapiens chromosome 18 clone RP11-783N9 map 18, WORKING DRAFT SEQUENCE, 27 unordered pieces.    42   0.006  5
dna update 2004. 2. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT009609_17(CT009609|pid:none) Desulfococcus multivorans vrl isl...    92   8e-18
CP000527_534(CP000527|pid:none) Desulfovibrio vulgaris subsp. vu...    92   1e-17
AE017285_2761(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...    92   1e-17
CP001337_2564(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    89   7e-17
CP001087_2848(CP001087|pid:none) Desulfobacterium autotrophicum ...    89   1e-16
CP000702_1582(CP000702|pid:none) Thermotoga petrophila RKU-1, co...    87   4e-16
CP000916_1430(CP000916|pid:none) Thermotoga neapolitana DSM 4359...    85   2e-15
CP000141_173(CP000141|pid:none) Carboxydothermus hydrogenoforman...    85   2e-15
CP000804_3679(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    83   5e-15
CP000969_1644(CP000969|pid:none) Thermotoga sp. RQ2, complete ge...    83   6e-15
protein update 2009. 6.10
PSORT 

 psg: 0.54  gvh: 0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 2.32  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSE203 is nuc
5' end seq. ID SSE203F
5' end seq. 
>SSE203F.Seq
AGTTCTTGTTAAACAATTAATGAGTAAATCATTATTTACTATTAATTTAGATACAACTTT
AGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATTCATAGATTACCAGTAGTTGACAA
TGACGGTAATCTAAAAGGAATTATCACAGATAGAGATTTAAGATTAGCAACTGATTCACC
ATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAATTAAGACTTCACAAAGTTTCTTC
TATTATGAAACAAAATCCAGTTACTATCGAAGATTTTTCTCCAGTTGTAGAGGCAGCAAA
ATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTATTAGATAAAAAAGGTCGTTTAAT
TGGAATGGTAACAAGATCTGACCTATTGGACTTATTAATTAAAGTTTTAGAGCCAGTACC
ACCACAAAGTTAA----------
Length of 5' end seq. 433
3' end seq. ID SSE203Z
3' end seq. 
>SSE203Z.Seq
----------CCCCCCCAAAGTTAAAANTAAAAAAAAATTNAAAAAAAAAAAAAATANTG
GGTAATTTTATTTATTTGTTTTATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 152
Connected seq. ID SSE203P
Connected seq. 
>SSE203P.Seq
AGTTCTTGTTAAACAATTAATGAGTAAATCATTATTTACTATTAATTTAGATACAACTTT
AGATGTTGCCTTAAAAAGTTTAAATGCCAATTCAATTCATAGATTACCAGTAGTTGACAA
TGACGGTAATCTAAAAGGAATTATCACAGATAGAGATTTAAGATTAGCAACTGATTCACC
ATTTCTTCCAGAGAATAATGAAGATAGATTGGAAAAATTAAGACTTCACAAAGTTTCTTC
TATTATGAAACAAAATCCAGTTACTATCGAAGATTTTTCTCCAGTTGTAGAGGCAGCAAA
ATTAATGAGAGTTACAAATGTAGGAGGATTACCCGTATTAGATAAAAAAGGTCGTTTAAT
TGGAATGGTAACAAGATCTGACCTATTGGACTTATTAATTAAAGTTTTAGAGCCAGTACC
ACCACAAAGTTAA----------CCCCCCCAAAGTTAAAANTAAAAAAAAATTNAAAAAA
AAAAAAAATANTGGGTAATTTTATTTATTTGTTTTATTTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 585
Full length Seq ID -
Full length Seq. -
Length of full length seq. -