>SSE188 (SSE188Q) /CSM/SS/SSE1-D/SSE188Q.Seq.d/
XXXXXXXXXXAAAAAAAAAAATTTTAAAATATTTTTTTTAAAATCAATTTTAAATNTAAA
TAATAATGGTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGNAAAAAAAAAAAAAA
AGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGTAATG
GTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCA
ATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTAC
TTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA

---KKNFKIFFLKSILNXNNNGFFFFIKKRKKKXKKKKKEKKNLKKKKKIEKKKLKM*w*
nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifikkkkrkkkt

Frame A:
---kkkilkyff*nqf*x*iimvfffl*kkerkkxkkkkkkkri*kkkkk*kkks*rcng
ktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fksil*fl*kkkkekkkq


Frame B:
---kkkf*niffkinfkxk**wffffykkkkekkxkkkkrkkefkkkkknrkkkvkdvmv
kpk*ngnpkkdlyklpl*smyrycsvcvyavrssllfsyfnlnlycnfykkkkkkkknk


Frame C:
---KKNFKIFFLKSILNXNNNGFFFFIKKRKKKXKKKKKEKKNLKKKKKIEKKKLKM*w*
nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifikkkkrkkkt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        285   2e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        285   2e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        285   2e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        285   2e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        285   2e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        285   2e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        285   2e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        285   2e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        285   2e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                        285   2e-76

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   232  2e-92  3
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    58  8e-05  1
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    34  0.17  4
BZ693514|BZ693514.1 SP__Ba0035G21.r SP__Ba Sorghum propinquum genomic clone SP__Ba0035G21 3', genomic survey sequence.    36  0.24  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          46  0.29  1
AZ172393|AZ172393.1 SP_0121_B2_H08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=121 Col=16 Row=P, DNA sequence.    46  0.29  1
AC097049|AC097049.7 Rattus norvegicus clone CH230-204H23, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    46  0.29  1
AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.    46  0.29  1
AC083909|AC083909.20 Mus musculus 1 BAC RP23-424A2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence.    46  0.29  1
AC098059|AC098059.9 Rattus norvegicus clone CH230-126O9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.29  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 251,772,626

 psg: 0.85  gvh: 0.28  alm: 0.50  top: 0.33  tms: 0.00  mit: 0.34  mip: 0.06
 nuc: 1.24  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSE188 is nuc

>SSE188Z.Seq
----------AAAAAAAAAAATTTTAAAATATTTTTTTTAAAATCAATTTTAAATNTAAA
TAATAATGGTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAAAGNAAAAAAAAAAAAAA
AGAAAAAAAGAATTTAAAAAAAAAAAAAAAAATAGAAAAAAAAAAGTTAAAGATGTAATG
GTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCA
ATGTATAGATATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTAC
TTTAATTTAAATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA