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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE187
Library SS
(Link to library)
Clone ID SSE187
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09658-1
Original site URL
Representative seq. ID SSE187F
(Link to Original site)
Representative DNA sequence 
>SSE187 (SSE187Q) /CSM/SS/SSE1-D/SSE187Q.Seq.d/
GCACAATTAAAGATTCAATTCCCATTGATTGAAGAAGAATTATTAGAGTCATTATTCCTT
CAAACTGGATATCATTTTAAGGATACAATGAGTTATATTTATGAAGTATTTCCAGAGAGT
AAACATAATGCTAAATCAGTTTCAAACTTTGCAAATAAAGTACGTGAATCCTCAAATCAA
TATTATTTAAAGAATAATATCTATAATCCACAAGCTGAAAGAGATAAACTCTCTCAATTA
CAAGCACAACAAGAAATTCAACAACAAGAACAATTATTTGAAAATAXXXXXXXXXX
sequence update 1998. 9.10
Translated Amino Acid sequence 
AQLKIQFPLIEEELLESLFLQTGYHFKDTMSYIYEVFPESKHNAKSVSNFANKVRESSNQ
YYLKNNIYNPQAERDKLSQLQAQQEIQQQEQLFEN---
Translated Amino Acid sequence (All Frames) 
Frame A:
AQLKIQFPLIEEELLESLFLQTGYHFKDTMSYIYEVFPESKHNAKSVSNFANKVRESSNQ
YYLKNNIYNPQAERDKLSQLQAQQEIQQQEQLFEN---


Frame B:
hn*rfnsh*lkkny*shysfkldiilriq*vifmkyfqrvnimlnqfqtlqikyvnpqin
ii*riisiihklkeinslnykhnkkfnnknnylk---


Frame C:
tikdsipid*rriirviipsnwisf*gynelyl*sisre*t*c*isfklck*st*ilksi
lfke*yl*sts*kr*tlsitsttrnsttrtii*k---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE187 (SSE187Q) /CSM/SS/SSE1-D/SSE187Q.Seq.d/                        567   e-161
CFC367 (CFC367Q) /CSM/CF/CFC3-C/CFC367Q.Seq.d/                        567   e-161
CFE594 (CFE594Q) /CSM/CF/CFE5-D/CFE594Q.Seq.d/                        553   e-157
SSG741 (SSG741Q) /CSM/SS/SSG7-B/SSG741Q.Seq.d/                        381   e-105
VFI757 (VFI757Q) /CSM/VF/VFI7-C/VFI757Q.Seq.d/                        331   3e-90
SLE423 (SLE423Q) /CSM/SL/SLE4-A/SLE423Q.Seq.d/                         44   0.001
VHB651 (VHB651Q) /CSM/VH/VHB6-C/VHB651Q.Seq.d/                         42   0.005
SFH188 (SFH188Q) /CSM/SF/SFH1-D/SFH188Q.Seq.d/                         42   0.005
FC-BG09 (FC-BG09Q) /CSM/FC/FC-BG/FC-BG09Q.Seq.d/                       42   0.005
AHK436 (AHK436Q) /CSM/AH/AHK4-B/AHK436Q.Seq.d/                         42   0.005
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38  0.10  11
AC131869|AC131869.6 Rattus norvegicus clone CH230-17N10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    54  0.20  3
AC094311|AC094311.9 Rattus norvegicus clone CH230-3G7, WORKING DRAFT SEQUENCE, 3 unordered pieces.    54  0.21  3
AX583652|AX583652.1 Sequence 29 from Patent WO02059148.           46  0.23  1
AL357507|AL357507.9 Human DNA sequence from clone RP11-694J20 on chromosome 6 Contains  STSs, GSSs and a CpG island.    32  0.26  6
AF067946|AF067946.2 Caenorhabditis elegans cosmid W02G9, complete sequence.    46  0.26  2
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    34  0.69  6
AX621532|AX621532.1 Sequence 4495 from Patent WO02094868.         46  0.75  3
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    46  0.81  10
AX584062|AX584062.1 Sequence 439 from Patent WO02059148.          46  0.88  3
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001321_1845(CP001321|pid:none) Haemophilus parasuis SH0165, co...    34   1.4
BC085878_1(BC085878|pid:none) Rattus norvegicus death associated...    32   6.7
protein update 2009. 1.29
PSORT 

 psg: 0.63  gvh: 0.33  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSE187 is cyt
5' end seq. ID SSE187F
5' end seq. 
>SSE187F.Seq
GCACAATTAAAGATTCAATTCCCATTGATTGAAGAAGAATTATTAGAGTCATTATTCCTT
CAAACTGGATATCATTTTAAGGATACAATGAGTTATATTTATGAAGTATTTCCAGAGAGT
AAACATAATGCTAAATCAGTTTCAAACTTTGCAAATAAAGTACGTGAATCCTCAAATCAA
TATTATTTAAAGAATAATATCTATAATCCACAAGCTGAAAGAGATAAACTCTCTCAATTA
CAAGCACAACAAGAAATTCAACAACAAGAACAATTATTTGAAAATA----------
Length of 5' end seq. 286
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -