NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE186
Library SS
(Link to library)
Clone ID SSE186
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10248-1
Original site URL
Representative seq. ID SSE186P
(Link to Original site)
Representative DNA sequence 
>SSE186 (SSE186Q) /CSM/SS/SSE1-D/SSE186Q.Seq.d/
GAGAATATGCCGATAGTCTTGGTATTCCATTCATGGAAGCTTCTGCTGCAACTGGTGTTA
ATGTTGAAGAGGCTTTCATGGCAATGGCAAATGAAATTTATAGAAATCATATGGGTGGTT
CAAAACCTTCTGTTGTAAACCCAGGAAGTGGAGGTACCAGTAACACTGGTGGTAAAAAAA
AAATTTTGTTAATAXXXXXXXXXXGAAGGGTTNGANGAAGCNCCGGGTTTTTNCCAATTG
TTTTAATAGTTTTNTNTAATTGCAACNTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
EYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVNPGSGGTSNTGGKKK
ILLI---

---RVXXSXGFXPIVLIVXXNCNXKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
enmpivlvfhswklllqlvlmlkrlswqwqmkfieiiwvvqnlll*tqevevpvtlvvkk
kfc*---

---egxxeapgfxqlf**fxxiatskkkkkkkkkkkkkkkkkkkkk

Frame B:
ricr*swysihgsfccnwc*c*rgfhgngk*nl*ksygwfktfcckprkwryq*hww*kk
nfvn---

---kgxxkxrvfxncfnsfx*lqxqkkkkkkkkkkkkkkkkkkkkk

Frame C:
EYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVNPGSGGTSNTGGKKK
ILLI---

---RVXXSXGFXPIVLIVXXNCNXKKKKKKKKKKKKKKKKKKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL425 (SSL425Q) /CSM/SS/SSL4-B/SSL425Q.Seq.d/                        343   1e-93
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/                        343   1e-93
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/                        343   1e-93
SSE186 (SSE186Q) /CSM/SS/SSE1-D/SSE186Q.Seq.d/                        343   1e-93
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/                        343   1e-93
SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/                        331   4e-90
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/                        218   4e-56
SSG849 (SSG849Q) /CSM/SS/SSG8-C/SSG849Q.Seq.d/                        188   4e-47
SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/                        188   4e-47
SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/                        168   3e-41
own update 2001. 3.24
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF305959|AF305959.1 Haemonchus contortus RAS-related protein (RAB-2) mRNA, partial cds.    54  0.001  1
BQ410425|BQ410425.1 GA__Ed0030F10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0030F10r, mRNA sequence.    52  0.004  1
BQ401810|BQ401810.1 GA__Ed0045G11r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0045G11r, mRNA sequence.    52  0.004  1
BQ401786|BQ401786.1 GA__Ed0045F10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0045F10r, mRNA sequence.    52  0.004  1
AJ559105|AJ559105.1 Antirrhinum majus EST, clone 018_1_09_g12.    36  0.010  2
BI892905|BI892905.1 sag80e10.y1 Gm-c1084 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1084-596 5' similar to TR:Q39845 Q39845 SMALL GTP-BINDING PROTEIN. [1] ;, mRNA sequence.    50  0.017  1
BI943746|BI943746.1 sa34a04.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1159 5' similar to TR:Q39845 Q39845 SMALL GTP-BINDING PROTEIN. [1] ;, mRNA sequence.    50  0.017  1
BI944255|BI944255.1 sa95h11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-7102 5' similar to TR:Q39845 Q39845 SMALL GTP-BINDING PROTEIN. [1] ;, mRNA sequence.    50  0.017  1
BM891712|BM891712.1 sam43b09.y1 Gm-c1068 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1068-7385 5' similar to TR:Q39845 Q39845 SMALL GTP-BINDING PROTEIN. [1] ;, mRNA sequence.    50  0.017  1
BU083303|BU083303.1 sar43b08.y1 Gm-c1049 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1049-9280 5' similar to TR:Q39845 Q39845 SMALL GTP-BINDING PROTEIN. [1] ;, mRNA sequence.    50  0.017  1
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E92) RecName: Full=Ras-related protein RabG1;                      85   9e-16
(Q05974) RecName: Full=Ras-related protein Rab-1A;  &S38339(S383...    52   5e-06
(P34140) RecName: Full=Ras-related protein Rab-1B;                     51   1e-05
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...    51   1e-05
D38625(D38625)GTP-binding protein o-rab1 - electric ray (Discopy...    50   2e-05
(P22125) RecName: Full=Ras-related protein ORAB-1;  &M38393_1(M3...    50   2e-05
AF398467_1(AF398467|pid:none) Scyliorhinus canicula GTP binding ...    50   2e-05
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3...    50   2e-05
BT078127_1(BT078127|pid:none) Lepeophtheirus salmonis clone lsal...    49   4e-05
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ...    49   4e-05
protein update 2009. 6.10
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 1.38  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSE186 is nuc
5' end seq. ID SSE186F
5' end seq. 
>SSE186F.Seq
GAGAATATGCCGATAGTCTTGGTATTCCATTCATGGAAGCTTCTGCTGCAACTGGTGTTA
ATGTTGAAGAGGCTTTCATGGCAATGGCAAATGAAATTTATAGAAATCATATGGGTGGTT
CAAAACCTTCTGTTGTAAACCCAGGAAGTGGAGGTACCAGTAACACTGGTGGTAAAAAAA
AAATTTTGTTAATA----------
Length of 5' end seq. 194
3' end seq. ID SSE186Z
3' end seq. 
>SSE186Z.Seq
----------GAAGGGTTNGANGAAGCNCCGGGTTTTTNCCAATTGTTTTAATAGTTTTN
TNTAATTGCAACNTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 130
Connected seq. ID SSE186P
Connected seq. 
>SSE186P.Seq
GAGAATATGCCGATAGTCTTGGTATTCCATTCATGGAAGCTTCTGCTGCAACTGGTGTTA
ATGTTGAAGAGGCTTTCATGGCAATGGCAAATGAAATTTATAGAAATCATATGGGTGGTT
CAAAACCTTCTGTTGTAAACCCAGGAAGTGGAGGTACCAGTAACACTGGTGGTAAAAAAA
AAATTTTGTTAATA----------GAAGGGTTNGANGAAGCNCCGGGTTTTTNCCAATTG
TTTTAATAGTTTTNTNTAATTGCAACNTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 324
Full length Seq ID -
Full length Seq. -
Length of full length seq. -