>AFL163 (AFL163Q) /CSM/AF/AFL1-C/AFL163Q.Seq.d/
XXXXXXXXXXATTACTCCATACCAAGTTGATAAGGTTGCNTGCAAAGATGGTGATGACTT
TGTTCAAATTGCCAATTCCAAAACTTACTNCACCAGNTTCTNANATTGTTAGCCATTTAA
CAGTTCGTCNGACACATACACCATATGACGTATGTTGTNAATGNAAGTGTT

---LLHTKLIRLXAKMVMTLFKLPIPKLTXPXSXIVSHLTVRXTHTPYDVCCXXKC

Frame A:
---LLHTKLIRLXAKMVMTLFKLPIPKLTXPXSXIVSHLTVRXTHTPYDVCCXXKC


Frame B:
---ysips**gcxqrw**lcsncqfqnllhqxlxllai*qfvxhihhmtyvvnxsv


Frame C:
---tpyqvdkvackdgddfvqiansktyxtxfxxc*pfnsssdtyti*rmlxmxv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL163 (AFL163Q) /CSM/AF/AFL1-C/AFL163Q.Seq.d/                        272   2e-72
VSJ503 (VSJ503Q) /CSM/VS/VSJ5-A/VSJ503Q.Seq.d/                        232   1e-60
VSI881 (VSI881Q) /CSM/VS/VSI8-D/VSI881Q.Seq.d/                        232   1e-60
VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                        232   1e-60
VSB653 (VSB653Q) /CSM/VS/VSB6-C/VSB653Q.Seq.d/                        232   1e-60
VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                        232   1e-60
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/                        232   1e-60
VHH812 (VHH812Q) /CSM/VH/VHH8-A/VHH812Q.Seq.d/                        232   1e-60
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                        232   1e-60
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/                        232   1e-60

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   127   3e-52  2
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   127   3e-52  2
U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   127   3e-52  2
AC139008|AC139008.1 Homo sapiens chromosome 17 clone CTD-2348E9 map 17, LOW-PASS SEQUENCE SAMPLING.    34   5.4    2
AC093004|AC093004.2 Homo sapiens 3 BAC RP11-129J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40   10     1
AL245991|AL245991.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 029F12 of library G from Tetraodon nigroviridis.    40   10     1
AC023702|AC023702.4 Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    40   10     1
AC130390|AC130390.4 Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    40   10     1
CQ714974|CQ714974.1 Sequence 908 from Patent WO02068579.           40   10     1
AC019061|AC019061.4 Homo sapiens chromosome 3 clone RP11-129J11, WORKING DRAFT SEQUENCE, 15 unordered pieces.    40   10     1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...    51   4e-13
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...    51   4e-13

 psg: 0.82  gvh: 0.44  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for AFL163 is mit

>AFL163Z.Seq
----------ATTACTCCATACCAAGTTGATAAGGTTGCNTGCAAAGATGGTGATGACTT
TGTTCAAATTGCCAATTCCAAAACTTACTNCACCAGNTTCTNANATTGTTAGCCATTTAA
CAGTTCGTCNGACACATACACCATATGACGTATGTTGTNAATGNAAGTGTT