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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE161
Library SS
(Link to library)
Clone ID SSE161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14131-1
Original site URL
Representative seq. ID SSE161Z
(Link to Original site)
Representative DNA sequence 
>SSE161 (SSE161Q) /CSM/SS/SSE1-C/SSE161Q.Seq.d/
XXXXXXXXXXGGAACACACTCACCCATCAACCGGTGCTAAAGGTGATAATGATCCATTAG
ACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAAACAAGTTAAAGTTC
TTGGTGTTTTCGCTATGATTGATGCCGGTGAAACCGATTGGAAGATCCTTTGCATTGACG
TTAACGATCCAATTGCTTCACAAATCAACTCTCAAGAAGATATTGAAAAACATTTACCAG
GTAAAATTAATGAAGTCTACACCTTTTTAAGAGATTACAAAATCCCAGATGGTAAAGGTC
CAAATCAATTCGCTTTTGATGGTAAATTACAATCAATTGATTTCTCCATGAAAATCATTG
AGGAAACTGAAGCTGAATGGAAAGATTTAGTTGGTGGTAAAACAAAATCATCACTCTCTG
TTGTAAACACAACTTTAAATGATTCAAATACTGTTACCGCTGATGTTGCTGCTCAAAAAC
TTAACTTTTGACTCAATAATAATAATAATAAAATAATTTCAAAACTATAGAAAATAAATA
ATGTTTTGGTTTAATGTAAAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
---EHTHPSTGAKGDNDPLDACEIGSGQGVTGEFKQVKVLGVFAMIDAGETDWKILCIDV
NDPIASQINSQEDIEKHLPGKINEVYTFLRDYKIPDGKGPNQFAFDGKLQSIDFSMKIIE
ETEAEWKDLVGGKTKSSLSVVNTTLNDSNTVTADVAAQKLNF*lnnnnnkiiskl*kinn
vlv*ckk
Translated Amino Acid sequence (All Frames) 
Frame A:
---EHTHPSTGAKGDNDPLDACEIGSGQGVTGEFKQVKVLGVFAMIDAGETDWKILCIDV
NDPIASQINSQEDIEKHLPGKINEVYTFLRDYKIPDGKGPNQFAFDGKLQSIDFSMKIIE
ETEAEWKDLVGGKTKSSLSVVNTTLNDSNTVTADVAAQKLNF*lnnnnnkiiskl*kinn
vlv*ckk


Frame B:
---ntlthqpvlkvimih*tlvklvlvkv*lvnsnklkflvfsl*lmpvkpigrsfaltl
tiqllhkstlkkilkniyqvklmkstpf*eitksqmvkvqinsllmvnynqlisp*kslr
klklngki*lvvkqnhhsll*tql*miqillplmlllknltfdsiiiiik*fqnyrk*im
fwfnvk


Frame C:
---thspinrc*r***sirrl*nwfwsrcnw*iqts*sswcfryd*cr*nrledplh*r*
rsncftnqlsrry*ktftr*n**slhlfkrlqnprw*rsksirf*w*itin*flhenh*g
n*s*merfsww*nkiitlcckhnfk*fkycyr*cccskt*lltq*****nnfktienk*c
fglm*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE161 (SSE161Q) /CSM/SS/SSE1-C/SSE161Q.Seq.d/                        955   0.0
VSJ527 (VSJ527Q) /CSM/VS/VSJ5-B/VSJ527Q.Seq.d/                        954   0.0
VSC662 (VSC662Q) /CSM/VS/VSC6-C/VSC662Q.Seq.d/                        954   0.0
SLC569 (SLC569Q) /CSM/SL/SLC5-C/SLC569Q.Seq.d/                        954   0.0
AHN496 (AHN496Q) /CSM/AH/AHN4-D/AHN496Q.Seq.d/                        954   0.0
VSC773 (VSC773Q) /CSM/VS/VSC7-D/VSC773Q.Seq.d/                        946   0.0
VSC388 (VSC388Q) /CSM/VS/VSC3-D/VSC388Q.Seq.d/                        918   0.0
SSD162 (SSD162Q) /CSM/SS/SSD1-C/SSD162Q.Seq.d/                        819   0.0
VFA524 (VFA524Q) /CSM/VF/VFA5-A/VFA524Q.Seq.d/                        466   e-130
VSB190 (VSB190Q) /CSM/VS/VSB1-D/VSB190Q.Seq.d/                         40   0.035
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX488957|AX488957.1 Sequence 6257 from Patent WO02053728.         52  3e-15  3
CA756008|0    48  6e-07  2
BI508766|BI508766.1 BB170002B10G08.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170002B10G08 5', mRNA sequence.    36  2e-05  4
BF015360|BF015360.1 kq63d02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:IPYR_CAEEL Q18680 PROBABLE INORGANIC PYROPHOSPHATASE ;, mRNA sequence.    36  2e-04  3
X14230|X14230.1 Kluyveromyces lactis TRP1 gene, HHT1 gene and IPP gene for N-(5'-phosphoribosyl)anthranilate isomerase, histone H3 and inorganic pyrophosphatase (EC 3.6.1.1) respectively.    38  5e-04  3
AL395832|AL395832.1 T7 end of clone AR0AA026D09 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii.    42  0.002  2
AL430701|AL430701.1 clone BA0AB039D10 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    32  0.003  3
BQ586324|BQ586324.1 E012395-024-013-F14-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-013-F14 5-PRIME, mRNA sequence.    46  0.023  2
AL427477|AL427477.1 clone BA0AB019D06 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    38  0.13  2
AZ924183|AZ924183.1 4906.ic27m21.s1 Saccharomyces mikatae IFO 1815 Saccharomyces mikatae genomic clone 4906.ic27m21.s1, DNA sequence.    40  0.20  2
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54PV8) RecName: Full=Inorganic pyrophosphatase;          EC=3....   317   2e-85
(Q6C1T4) RecName: Full=Inorganic pyrophosphatase;          EC=3....   172   7e-42
FN392319_22(FN392319|pid:none) Pichia pastoris GS115 chromosome ...   165   7e-40
(Q6BWA5) RecName: Full=Inorganic pyrophosphatase;          EC=3....   164   1e-39
(P13998) RecName: Full=Inorganic pyrophosphatase;          EC=3....   164   1e-39
CR382125_766(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   164   1e-39
(P19117) RecName: Full=Inorganic pyrophosphatase;          EC=3....   161   1e-38
(Q6FRB7) RecName: Full=Inorganic pyrophosphatase;          EC=3....   160   2e-38
(Q5B912) RecName: Full=Inorganic pyrophosphatase;          EC=3....   160   3e-38
(Q6MVH7) RecName: Full=Inorganic pyrophosphatase;          EC=3....   159   4e-38
protein update 2009. 6.10
PSORT 

 psg: 0.47  gvh: 0.48  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSE161 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSE161Z
3' end seq. 
>SSE161Z.Seq
----------GGAACACACTCACCCATCAACCGGTGCTAAAGGTGATAATGATCCATTAG
ACGCTTGTGAAATTGGTTCTGGTCAAGGTGTAACTGGTGAATTCAAACAAGTTAAAGTTC
TTGGTGTTTTCGCTATGATTGATGCCGGTGAAACCGATTGGAAGATCCTTTGCATTGACG
TTAACGATCCAATTGCTTCACAAATCAACTCTCAAGAAGATATTGAAAAACATTTACCAG
GTAAAATTAATGAAGTCTACACCTTTTTAAGAGATTACAAAATCCCAGATGGTAAAGGTC
CAAATCAATTCGCTTTTGATGGTAAATTACAATCAATTGATTTCTCCATGAAAATCATTG
AGGAAACTGAAGCTGAATGGAAAGATTTAGTTGGTGGTAAAACAAAATCATCACTCTCTG
TTGTAAACACAACTTTAAATGATTCAAATACTGTTACCGCTGATGTTGCTGCTCAAAAAC
TTAACTTTTGACTCAATAATAATAATAATAAAATAATTTCAAAACTATAGAAAATAAATA
ATGTTTTGGTTTAATGTAAAAAA
Length of 3' end seq. 553
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -