SSE154
Library SS
(Link to library)
Clone ID SSE154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01660-1
Original site URL
Representative seq. ID SSE154P
(Link to Original site)
Representative DNA sequence
>SSE154 (SSE154Q) /CSM/SS/SSE1-C/SSE154Q.Seq.d/
TAAGAACATCATATTTGGTTCCCAATATAATTTTAAAATTCTGTGTAAATAATTATTTAT
TTTAAATTATCTAAACACTTCAAAATAATAATCAATATTTTTTGGGTATATATATATATA
TTTTATATACATAAAATAAAAATGTATGGCTATGAATGTTTTTGAAAATAAATAATTTCG
AAAAAACATAAAAAATAAAAAAAAAAAAXXXXXXXXXXAAATTTTATTTTTTAAAATTTT
TTATTTAAAATTTTTAATTTTTTTTTTTTTTCCAACCAAAAACAACATTTTTTTTTTTTT
TAAAATTGTTTTGCCATTATTTTGATTTTTCTTTTTAACAGGTGTCAAATCAATTAAATA
GTTTTTTAAATCAAAATTATAAAATAAAGATATAATCAAAAAAAAAAAAAAAAAAATTAT
TAAAAAAAAAAAAAAATCAATTTTTAAAGACAATTAATAATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 2001. 3. 2
Translated Amino Acid sequence
kniifgsqynfkilck*lfilnylntsk**siffgyiyiyfiyik*kcmamnvfenk*FR
KNIKNKKKK---

---ILFFKIFYLKFLIFFFFPTKNNIFFFFKIVLPLF*fffltgvksik*ffkskl*nkd
iikkkkkkiikkkkksifkdn**lkkkkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
*ehhiwfpi*f*nsv*iiiyfklskhfkiiinifwvyiyifyihkikmygyecf*k*iis
kkhkk*kkk---

---kfyflkffi*nf*fffffqpkttfffflklfchyfdfsf*qvsnqlnsflnqnykik
i*skkkkkkllkkkknqflktinn*kkkkkkkkkkkkkkkkkkkkkk

Frame B:
kniifgsqynfkilck*lfilnylntsk**siffgyiyiyfiyik*kcmamnvfenk*FR
KNIKNKKKK---

---nfif*nflfkifnffffsnqkqhffff*ncfaiiliflfnrcqin*ivf*ikiik*r
ynqkkkkkny*kkkkinf*rqliikkkkkkkkkkkkkkkkkkkkkkk

Frame C:
rtsylvpniilkfcvnnylf*ii*tlqnnnqyflgiyiyilyt*nknvwl*mflkinnfe
kt*kikkk---

---ILFFKIFYLKFLIFFFFPTKNNIFFFFKIVLPLF*fffltgvksik*ffkskl*nkd
iikkkkkkiikkkkksifkdn**lkkkkkkkkkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSE154 (SSE154Q) /CSM/SS/SSE1-C/SSE154Q.Seq.d/ 210 2e-53
SSB453 (SSB453Q) /CSM/SS/SSB4-C/SSB453Q.Seq.d/ 186 2e-46
VFL565 (VFL565Q) /CSM/VF/VFL5-C/VFL565Q.Seq.d/ 44 0.002
SSC335 (SSC335Q) /CSM/SS/SSC3-B/SSC335Q.Seq.d/ 44 0.002
SSE669 (SSE669Q) /CSM/SS/SSE6-C/SSE669Q.Seq.d/ 40 0.033
CHA517 (CHA517Q) /CSM/CH/CHA5-A/CHA517Q.Seq.d/ 40 0.033
VSJ836 (VSJ836Q) /CSM/VS/VSJ8-B/VSJ836Q.Seq.d/ 38 0.13
VSB645 (VSB645Q) /CSM/VS/VSB6-B/VSB645Q.Seq.d/ 38 0.13
VSA645 (VSA645Q) /CSM/VS/VSA6-B/VSA645Q.Seq.d/ 38 0.13
SSM284 (SSM284Q) /CSM/SS/SSM2-D/SSM284Q.Seq.d/ 38 0.13

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 210 e-101 3
AC141675|AC141675.1 Apis mellifera clone CH224-54J4, WORKING DRAFT SEQUENCE, 47 unordered pieces. 40 0.001 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 34 0.009 9
AP004528|AP004528.1 Lotus japonicus genomic DNA, chromosome 6, clone:LjT03B03, TM0057b. 38 0.013 3
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 36 0.026 8
BZ104542|BZ104542.1 CH230-150E3.TJC CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-150E3, DNA sequence. 32 0.027 3
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 0.047 10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 38 0.055 7
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 34 0.063 8
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2. 36 0.064 6
dna update 2003. 7.22
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 269,980,937
protein update 2009. 6.10
PSORT

psg: 0.86 gvh: 0.37 alm: 0.25 top: 0.13 tms: 0.07 mit: 0.49 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: mitochondrial
16.0 %: Golgi
16.0 %: nuclear
8.0 %: cytoplasmic
8.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for SSE154 is mit

5' end seq. ID SSE154F
5' end seq.
>SSE154F.Seq
TAAGAACATCATATTTGGTTCCCAATATAATTTTAAAATTCTGTGTAAATAATTATTTAT
TTTAAATTATCTAAACACTTCAAAATAATAATCAATATTTTTTGGGTATATATATATATA
TTTTATATACATAAAATAAAAATGTATGGCTATGAATGTTTTTGAAAATAAATAATTTCG
AAAAAACATAAAAAATAAAAAAAAAAAA----------
Length of 5' end seq. 208
3' end seq. ID SSE154Z
3' end seq.
>SSE154Z.Seq
----------AAATTTTATTTTTTAAAATTTTTTATTTAAAATTTTTAATTTTTTTTTTT
TTTCCAACCAAAAACAACATTTTTTTTTTTTTTAAAATTGTTTTGCCATTATTTTGATTT
TTCTTTTTAACAGGTGTCAAATCAATTAAATAGTTTTTTAAATCAAAATTATAAAATAAA
GATATAATCAAAAAAAAAAAAAAAAAAATTATTAAAAAAAAAAAAAAATCAATTTTTAAA
GACAATTAATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 313
Connected seq. ID SSE154P
Connected seq.
>SSE154P.Seq
TAAGAACATCATATTTGGTTCCCAATATAATTTTAAAATTCTGTGTAAATAATTATTTAT
TTTAAATTATCTAAACACTTCAAAATAATAATCAATATTTTTTGGGTATATATATATATA
TTTTATATACATAAAATAAAAATGTATGGCTATGAATGTTTTTGAAAATAAATAATTTCG
AAAAAACATAAAAAATAAAAAAAAAAAA----------AAATTTTATTTTTTAAAATTTT
TTATTTAAAATTTTTAATTTTTTTTTTTTTTCCAACCAAAAACAACATTTTTTTTTTTTT
TAAAATTGTTTTGCCATTATTTTGATTTTTCTTTTTAACAGGTGTCAAATCAATTAAATA
GTTTTTTAAATCAAAATTATAAAATAAAGATATAATCAAAAAAAAAAAAAAAAAAATTAT
TAAAAAAAAAAAAAAATCAATTTTTAAAGACAATTAATAATTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 521
Full length Seq ID -
Full length Seq. -
Length of full length seq. -