SSE149
Library SS
(Link to library)
Clone ID SSE149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01658-1|Contig-U16509-1
Original site URL
Representative seq. ID SSE149P
(Link to Original site)
Representative DNA sequence
>SSE149 (SSE149Q) /CSM/SS/SSE1-C/SSE149Q.Seq.d/
AATAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTAT
AGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAAT
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAAXXXXXXXXXXATAAATTTAAATAA
AAATAANGNATAAACCTTNTAGNGGGTTTACCNATTTNTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence
nk*kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***AIPWDLEKI
KKFKKKIKNNKK---

---INLNKNXX*tx*xvyxfxkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nk*kkkkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***AIPWDLEKI
KKFKKKIKNNKK---

---INLNKNXX*tx*xvyxfxkkkkkkkkkkkkkkkkkkk

Frame B:
inkkkkkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*rk*
kslkkk*kiik---

---*i*ikixxkpxxgftxx*kkkkkkkkkkkkkkkkkkk

Frame C:
*ikkkkkkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglrenk
kv*kknkk**k---

---kfk*k*xinlxxglpixkkkkkkkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/ 72 6e-12
SSM743 (SSM743Q) /CSM/SS/SSM7-B/SSM743Q.Seq.d/ 72 6e-12
SSM676 (SSM676Q) /CSM/SS/SSM6-D/SSM676Q.Seq.d/ 72 6e-12
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/ 72 6e-12
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/ 72 6e-12
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/ 72 6e-12
SSM326 (SSM326Q) /CSM/SS/SSM3-B/SSM326Q.Seq.d/ 72 6e-12
SSM317 (SSM317Q) /CSM/SS/SSM3-A/SSM317Q.Seq.d/ 72 6e-12
SSM222 (SSM222Q) /CSM/SS/SSM2-A/SSM222Q.Seq.d/ 72 6e-12
SSM123 (SSM123Q) /CSM/SS/SSM1-A/SSM123Q.Seq.d/ 72 6e-12

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 64 1e-17 2
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING. 44 1.1 1
AL356014|AL356014.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F25L23. 42 3.5 2
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655. 42 4.2 1
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces. 44 4.3 2
AC006685|AC006685.2 Caenorhabditis elegans clone T13G4, complete sequence. 36 5.0 2
BM028890|BM028890.1 IpSkn01670 Skin cDNA library Ictalurus punctatus cDNA 5' similar to Ictacalcin, mRNA sequence. 32 5.5 2
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4. 44 6.0 2
AC135487|AC135487.2 Rattus norvegicus clone CH230-341E5, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 17 1
AC131869|AC131869.6 Rattus norvegicus clone CH230-17N10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 17 1
dna update 2003. 7.22
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 118,839,309
protein update 2009. 6.10
PSORT

psg: 0.36 gvh: -0.19 alm: 0.74 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SSE149 is nuc

5' end seq. ID SSE149F
5' end seq.
>SSE149F.Seq
AATAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTAT
AGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAAT
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAA----------
Length of 5' end seq. 216
3' end seq. ID SSE149Z
3' end seq.
>SSE149Z.Seq
----------ATAAATTTAAATAAAAATAANGNATAAACCTTNTAGNGGGTTTACCNATT
TNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
Length of 3' end seq. 113
Connected seq. ID SSE149P
Connected seq.
>SSE149P.Seq
AATAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAATTTAATAAGTTTTAAAATGGTAT
AGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAAATAAAAAAT
AAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAA----------ATAAATTTAAATAA
AAATAANGNATAAACCTTNTAGNGGGTTTACCNATTTNTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 329
Full length Seq ID -
Full length Seq. -
Length of full length seq. -