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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE144
Library SS
(Link to library)
Clone ID SSE144
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08120-1
Original site URL
Representative seq. ID SSE144E
(Link to Original site)
Representative DNA sequence 
>SSE144 (SSE144Q) /CSM/SS/SSE1-B/SSE144Q.Seq.d/
ATTTTTTAAATATAAATTAAAAAAACAAAAACAAAAATTAAAATTTATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAAAAACAAAAAAGGGTTATTTAAACAAATTTCATTTTA
TTATAATAATAAAAATATTCACATAAAACAAAAATAAAAAAAAAAAAAAAAAAAAAATAC
AAGACAAAAATAGAATACCTCAAAAAAGGAAATAAAAATGTTTTTAAAGTTTAAAAATAT
TTTTTTTATAGTTTTAACACTATCAATAGTATTTAATGGTTTAATAGTAAATTCTAAAAA
TATCCATATTAATAATAAAAATAATAATAATAATAATAATAATAAGGATTTATCATCATC
TGAATCAGGATCTAGTAGTGATATAAATCCATATATTTCACAATATAATTCTGAAAGGGA
AACATTAGTAAATCAAGAGAATCAAATTAAATTAGGGTCAAATACTCCATTTAATTCAAA
GGAACAACAAGCAAATACAATTTTTTTAAATATTTTACAAAATGAAGAATTAAGTTTTTC
AAATAATGACCCATCTGGTGTTAATTTTTTTATTGAAAAACAAATTATTGAAAATGAATC
AACAATTTTTAAAATTATTCAAAATATGCCAAAAGGTAGTGCATTACATGTTCATCAAGA
TTCTAGTGCTACATATGATTATTTAATATCAGTTGGTAGTTATTTACCAAATTGTTATAT
TTATTTAACTAATGATGTAAATGATGCAAATAATGGTACATTCCATTTCTATGATAGTCA
ACCAACTGATAGTAATTGGAAATTATTATCAACAATTAGAGAGGGTGTTTCAAATGTTGA
ATCATTTGATCAACAACTTTTAGACTCTTTGACATTAATTGGTCAAGATTATGGTGACTA
TGTCTCACTTTGGAGAAAGTTTGATGGAATATTTGGTAGAGTTAATGGATTGGTAACTTA
TTTACCAATTGCCACAGGTTATATGGAGCATTTGTTCCAACAAATGATTCAAGATGGTGT
TCAACATATTGAGGTTAGAAAGTGTTTTGGAGATTTCTATGACCTAACCGGTAAAATCTA
TGATGATTATTGGTTCGTCCAAACTATGGAAGAATTAGTACTAACAACAAGACAAAAATA
TAATATGTCTGAATTTGCACTTAAAATTATTGGTTGCAATGGCAGACATAATAACCAATC
GGTGGTGTATGATGCAATGGTAATGTCATTGGATTTAAGAAATAAATACCCATCAACCTT
TGTCGGCTATGATTTGGTCGGTCCAGAGGATGAGGGTTACCCATTAATCTATTTCATTGA
GCAATTTGCAGAAATTAAAAAATTAGGTTACCAATACCAATATCCATTGGATTATTACTT
CCATGCTGGTGAAACTATTCTATACAATAATACAAATCTATATGATGCTATACTTTTAAA
TACTAAAAGAATCGGCCACGGTATTCAGTTACCAAAACATCCACTATTGATGGATTTAGT
ATTAAAGAATGATATTGGTATTGAAATTTGTCCAATTTCAAATCAAATCCTTCAATATGT
TTCTGATATGCGTGCTCATCCAGGTTTGGATTTATTAAATAGAGGTTTACCAGTTACTAT
CTCACCTGATGATCCTGCAATCTTTAATTATGGTGGCCTAAGTTATGATTTCTTTGAAGT
CACTTATTCTTGGGGTTTAAATCTTCAACAATTAAAACAATTAGCAATCAATTCAATTAA
TCATTCAAATACTTTTAATCAATCCGAATATAATTTACTCTATAATGCTTGGGAAGTAAA
ATGGTTTAATTTTATTGATTATATCATTAATACTTATTCAAATATTTAAAAAAAAAAAAA
AATAATAAAAAAAAAAAAATAAAAAAATAAAAAAAAAATAATAATAATAATCAAAATAAT
ATAAAAAA
sequence update 2000. 7.24
Translated Amino Acid sequence 
ffkyklkkqkqklkfikkkkkkkkkktknkkglfkqisfyynnknihikqk*kkkkkknt
rqk*NTSKKEIKMFLKFKNIFFIVLTLSIVFNGLIVNSKNIHINNKNNNNNNNNKDLSSS
ESGSSSDINPYISQYNSERETLVNQENQIKLGSNTPFNSKEQQANTIFLNILQNEELSFS
NNDPSGVNFFIEKQIIENESTIFKIIQNMPKGSALHVHQDSSATYDYLISVGSYLPNCYI
YLTNDVNDANNGTFHFYDSQPTDSNWKLLSTIREGVSNVESFDQQLLDSLTLIGQDYGDY
VSLWRKFDGIFGRVNGLVTYLPIATGYMEHLFQQMIQDGVQHIEVRKCFGDFYDLTGKIY
DDYWFVQTMEELVLTTRQKYNMSEFALKIIGCNGRHNNQSVVYDAMVMSLDLRNKYPSTF
VGYDLVGPEDEGYPLIYFIEQFAEIKKLGYQYQYPLDYYFHAGETILYNNTNLYDAILLN
TKRIGHGIQLPKHPLLMDLVLKNDIGIEICPISNQILQYVSDMRAHPGLDLLNRGLPVTI
SPDDPAIFNYGGLSYDFFEVTYSWGLNLQQLKQLAINSINHSNTFNQSEYNLLYNAWEVK
WFNFIDYIINTYSNI*kkkkiikkkk*knkkkiiiiikii*k
Translated Amino Acid sequence (All Frames) 
Frame A:
if*i*ikktktkikiykkkkkkkkkknkkqkrvi*tnfill***kyshktkikkkkkkky
ktkieylkkgnknvfkv*kyffysfntinsi*wfnskf*kypy***k********gfiii
*iri***yksiyfti*f*kgnisksresn*irvkysi*fkgttskynffkyftk*rikff
k**piwc*ffy*ktny*k*innf*nyskyakr*citcssrf*cyi*lfnisw*lftklly
lfn**ck*ck*wyipfl**stn***leiiinn*rgcfkc*ii*sttfrlfdinwsrlw*l
cltlekv*wniw*s*wignlftnchrlygafvptndsrwcsty*g*kvfwrfl*pnr*nl
**llvrpnygristnnktki*yv*ict*nywlqwqt**piggv*cngnvigfkk*ipinl
crl*fgrsrg*glpinlfh*aicrn*kirlpipisiglllpcw*nysiq*yksi*cytfk
y*knrprysvtktstidgfsike*ywy*nlsnfksnpsicf*yacssrfgfik*rftsyy
lt**scnl*lwwpkl*fl*shlflgfksstiktisnqfn*sfkyf*siri*ftl*clgsk
mv*fy*lyh*ylfkylkkkknnkkkkikk*kknnnnnqnnik


Frame B:
ffkyklkkqkqklkfikkkkkkkkkktknkkglfkqisfyynnknihikqk*kkkkkknt
rqk*NTSKKEIKMFLKFKNIFFIVLTLSIVFNGLIVNSKNIHINNKNNNNNNNNKDLSSS
ESGSSSDINPYISQYNSERETLVNQENQIKLGSNTPFNSKEQQANTIFLNILQNEELSFS
NNDPSGVNFFIEKQIIENESTIFKIIQNMPKGSALHVHQDSSATYDYLISVGSYLPNCYI
YLTNDVNDANNGTFHFYDSQPTDSNWKLLSTIREGVSNVESFDQQLLDSLTLIGQDYGDY
VSLWRKFDGIFGRVNGLVTYLPIATGYMEHLFQQMIQDGVQHIEVRKCFGDFYDLTGKIY
DDYWFVQTMEELVLTTRQKYNMSEFALKIIGCNGRHNNQSVVYDAMVMSLDLRNKYPSTF
VGYDLVGPEDEGYPLIYFIEQFAEIKKLGYQYQYPLDYYFHAGETILYNNTNLYDAILLN
TKRIGHGIQLPKHPLLMDLVLKNDIGIEICPISNQILQYVSDMRAHPGLDLLNRGLPVTI
SPDDPAIFNYGGLSYDFFEVTYSWGLNLQQLKQLAINSINHSNTFNQSEYNLLYNAWEVK
WFNFIDYIINTYSNI*kkkkiikkkk*knkkkiiiiikii*k


Frame C:
flnin*knknkn*nl*kkkkkkkkkkqktkkgylnkfhfiiiikift*nknkkkkkkkiq
dknripqkrk*kcf*slkiffl*f*hyq*ylmv***ilkisiliikiiiiiiiiriyhhl
nqdlvvi*ihifhniilkgkh**ikrikln*gqilhliqrnnkqiqff*ifykmkn*vfq
imthlvlifllknkllkmnqqflklfkicqkvvhymfikilvlhmii*yqlvviyqivif
i*lmm*mmqimvhsismivnqlivignyyqqlervfqmlnhlinnf*tl*h*lvkimvtm
shfgeslmeylvelmdw*liyqlpqviwsicsnk*fkmvfnilrlesvleismt*pvksm
miigssklwkn*y*qqdkniiclnlhlkllvamadiitnrwcmmqw*chwi*einthqpl
samiwsvqrmrvth*sislsnlqklkn*vtntnihwiitsmlvklfytiiqiymmlyf*i
lkesatvfsyqnihy*wi*y*rmilvlkfvqfqiksfnmflicvliqvwiy*ievyqlls
hlmilqslimva*vmislkslilgv*ifnn*nn*qsiqliiqillinpniiysimlgk*n
glilliisliliqifkkkkk**kkknkkikkk****sk*ykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE144 (SSE144Q) /CSM/SS/SSE1-B/SSE144Q.Seq.d/                       2894   0.0
SSG635 (SSG635Q) /CSM/SS/SSG6-B/SSG635Q.Seq.d/                       2258   0.0
AFD748 (AFD748Q) /CSM/AF/AFD7-B/AFD748Q.Seq.d/                       1350   0.0
AFM279 (AFM279Q) /CSM/AF/AFM2-D/AFM279Q.Seq.d/                       1275   0.0
SFJ863 (SFJ863Q) /CSM/SF/SFJ8-C/SFJ863Q.Seq.d/                       1217   0.0
CFI823 (CFI823Q) /CSM/CF/CFI8-A/CFI823Q.Seq.d/                       1195   0.0
SSJ756 (SSJ756Q) /CSM/SS/SSJ7-C/SSJ756Q.Seq.d/                         40   0.12
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/                         40   0.12
SSC454 (SSC454Q) /CSM/SS/SSC4-C/SSC454Q.Seq.d/                         40   0.12
SLK303 (SLK303Q) /CSM/SL/SLK3-A/SLK303Q.Seq.d/                         40   0.12
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  2516  0.0  15
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36  4e-04  15
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.            32  0.034  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          40  0.073  15
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34  0.077  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36  0.31  15
BH160498|BH160498.1 ENTRK92TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.35  2
BH167376|BH167376.1 ENTTS43TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.35  2
AZ542669|AZ542669.1 ENTET25TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.37  2
BH165141|BH165141.1 ENTTJ71TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.37  2
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_2(AC116305|pid:none) Dictyostelium discoideum chromosom...  1036   0.0
(Q553U5) RecName: Full=Protein CECR1 homolog; Flags: Precursor;      1035   0.0
AY902779_1(AY902779|pid:none) Gallus gallus CECR1 (CECR1) mRNA, ...   296   2e-78
BC051755_1(BC051755|pid:none) Homo sapiens cat eye syndrome chro...   291   4e-77
(Q9NZK5) RecName: Full=Cat eye syndrome critical region protein ...   290   1e-76
AF190746_1(AF190746|pid:none) Homo sapiens CECR1 protein mRNA, c...   290   1e-76
(Q5RC46) RecName: Full=Cat eye syndrome critical region protein ...   289   2e-76
AJ720326_1(AJ720326|pid:none) Gallus gallus mRNA for hypothetica...   289   3e-76
AK304818_1(AK304818|pid:none) Homo sapiens cDNA FLJ58672 complet...   286   1e-75
AY986978_1(AY986978|pid:none) Xenopus laevis insect-derived grow...   280   1e-73
protein update 2009. 7. 6
PSORT 

 psg: 0.70  gvh: 0.51  alm: 0.19  top: 0.37  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSE144 is cyt
5' end seq. ID SSE144F
5' end seq. 
>SSE144F.Seq
AATAAATTAAAATATAAATTTTTTATTTTTCTGTAATCTCATACATTAAACATTTTCCCA
CACATCAACAACAATTCCCCCATTTGGTTAATAGTCATCAAAAATAATTTTTTTAAAAAA
AAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAAA----------
Length of 5' end seq. 158
3' end seq. ID SSE144Z
3' end seq. 
>SSE144Z.Seq
----------GCGTGCTCATCCAGGTTTGGATTTATTAAATAGAGGTTTACCAGTTACTA
TCTCACCTGATGATCCTGCAATCTTTAATTATGGTGGCCTAAGTTATGATTTCTTTGAAG
TCACTTATTCTTGGGGTTTAAATNTTCAACAATTAAAACAATTAGCAATCAATTCAATTA
ATCATTCAAATACTTTTAATCAATCCGAATATAATTTACTNTATAATGCTTGGGAAGTAA
AATGGTTTAATTTTATTGATTATATCATTAATACTTATTCAAATATTTAAAAAAAAAAAA
AAATAATAAAAAAAAAAAAATAAAAAAATAAAAAAAAAATAATAATAATAATCAAAATAA
TATAAA
Length of 3' end seq. 356
Connected seq. ID SSE144P
Connected seq. 
>SSE144P.Seq
AATAAATTAAAATATAAATTTTTTATTTTTCTGTAATCTCATACATTAAACATTTTCCCA
CACATCAACAACAATTCCCCCATTTGGTTAATAGTCATCAAAAATAATTTTTTTAAAAAA
AAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAAA----------GCGTGCTCATCC
AGGTTTGGATTTATTAAATAGAGGTTTACCAGTTACTATCTCACCTGATGATCCTGCAAT
CTTTAATTATGGTGGCCTAAGTTATGATTTCTTTGAAGTCACTTATTCTTGGGGTTTAAA
TNTTCAACAATTAAAACAATTAGCAATCAATTCAATTAATCATTCAAATACTTTTAATCA
ATCCGAATATAATTTACTNTATAATGCTTGGGAAGTAAAATGGTTTAATTTTATTGATTA
TATCATTAATACTTATTCAAATATTTAAAAAAAAAAAAAAATAATAAAAAAAAAAAAATA
AAAAAATAAAAAAAAAATAATAATAATAATCAAAATAATATAAA
Length of connected seq. 514
Full length Seq ID SSE144E
Full length Seq. 
>SSE144E.Seq
ATTTTTTAAATATAAATTAAAAAAACAAAAACAAAAATTAAAATTTATAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACAAAAAACAAAAAAGGGTTATTTAAACAAATTTCATTTTA
TTATAATAATAAAAATATTCACATAAAACAAAAATAAAAAAAAAAAAAAAAAAAAAATAC
AAGACAAAAATAGAATACCTCAAAAAAGGAAATAAAAATGTTTTTAAAGTTTAAAAATAT
TTTTTTTATAGTTTTAACACTATCAATAGTATTTAATGGTTTAATAGTAAATTCTAAAAA
TATCCATATTAATAATAAAAATAATAATAATAATAATAATAATAAGGATTTATCATCATC
TGAATCAGGATCTAGTAGTGATATAAATCCATATATTTCACAATATAATTCTGAAAGGGA
AACATTAGTAAATCAAGAGAATCAAATTAAATTAGGGTCAAATACTCCATTTAATTCAAA
GGAACAACAAGCAAATACAATTTTTTTAAATATTTTACAAAATGAAGAATTAAGTTTTTC
AAATAATGACCCATCTGGTGTTAATTTTTTTATTGAAAAACAAATTATTGAAAATGAATC
AACAATTTTTAAAATTATTCAAAATATGCCAAAAGGTAGTGCATTACATGTTCATCAAGA
TTCTAGTGCTACATATGATTATTTAATATCAGTTGGTAGTTATTTACCAAATTGTTATAT
TTATTTAACTAATGATGTAAATGATGCAAATAATGGTACATTCCATTTCTATGATAGTCA
ACCAACTGATAGTAATTGGAAATTATTATCAACAATTAGAGAGGGTGTTTCAAATGTTGA
ATCATTTGATCAACAACTTTTAGACTCTTTGACATTAATTGGTCAAGATTATGGTGACTA
TGTCTCACTTTGGAGAAAGTTTGATGGAATATTTGGTAGAGTTAATGGATTGGTAACTTA
TTTACCAATTGCCACAGGTTATATGGAGCATTTGTTCCAACAAATGATTCAAGATGGTGT
TCAACATATTGAGGTTAGAAAGTGTTTTGGAGATTTCTATGACCTAACCGGTAAAATCTA
TGATGATTATTGGTTCGTCCAAACTATGGAAGAATTAGTACTAACAACAAGACAAAAATA
TAATATGTCTGAATTTGCACTTAAAATTATTGGTTGCAATGGCAGACATAATAACCAATC
GGTGGTGTATGATGCAATGGTAATGTCATTGGATTTAAGAAATAAATACCCATCAACCTT
TGTCGGCTATGATTTGGTCGGTCCAGAGGATGAGGGTTACCCATTAATCTATTTCATTGA
GCAATTTGCAGAAATTAAAAAATTAGGTTACCAATACCAATATCCATTGGATTATTACTT
CCATGCTGGTGAAACTATTCTATACAATAATACAAATCTATATGATGCTATACTTTTAAA
TACTAAAAGAATCGGCCACGGTATTCAGTTACCAAAACATCCACTATTGATGGATTTAGT
ATTAAAGAATGATATTGGTATTGAAATTTGTCCAATTTCAAATCAAATCCTTCAATATGT
TTCTGATATGCGTGCTCATCCAGGTTTGGATTTATTAAATAGAGGTTTACCAGTTACTAT
CTCACCTGATGATCCTGCAATCTTTAATTATGGTGGCCTAAGTTATGATTTCTTTGAAGT
CACTTATTCTTGGGGTTTAAATCTTCAACAATTAAAACAATTAGCAATCAATTCAATTAA
TCATTCAAATACTTTTAATCAATCCGAATATAATTTACTCTATAATGCTTGGGAAGTAAA
ATGGTTTAATTTTATTGATTATATCATTAATACTTATTCAAATATTTAAAAAAAAAAAAA
AATAATAAAAAAAAAAAAATAAAAAAATAAAAAAAAAATAATAATAATAATCAAAATAAT
ATAAAAAA
Length of full length seq. 1928