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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE143
Library SS
(Link to library)
Clone ID SSE143
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16264-1
Original site URL
Representative seq. ID SSE143F
(Link to Original site)
Representative DNA sequence 
>SSE143 (SSE143Q) /CSM/SS/SSE1-B/SSE143Q.Seq.d/
CAGATTACAAAATGGTCGGTAAATATCATGTTGCTAAACAAAATCGTCTACGTATGAAGG
CTAAACTCAATTCACGTGTCTCTGAAATCAAACAAAAGATGGCTCAAAATAAAAAGAATA
TAAAAAAAGAAAGTGCTAAAAAGAGTGTTGAATCATTTGCTAAAGCAGTTCTTGGTAATA
GAGCAAATAATTCAAATACTGGTAATGTCGCTTCTACCTCAACTATTCCAACTCAAGTCA
CTACAACTAGAACTGAATCTATGGTTATTCCACAAACTTTAAATCAACCACAAACTGCAA
CTCAATATXXXXXXXXXX
sequence update 1998. 9.10
Translated Amino Acid sequence 
DYKMVGKYHVAKQNRLRMKAKLNSRVSEIKQKMAQNKKNIKKESAKKSVESFAKAVLGNR
ANNSNTGNVASTSTIPTQVTTTRTESMVIPQTLNQPQTATQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
qitkwsvnimllnkivyv*rlnsihvslksnkrwlkikri*kkkvlkrvlnhllkqflvi
eqiiqilvmsllpqlfqlkslqlelnlwlfhkl*inhklqln---


Frame B:
rlqngr*iscc*tksstyeg*tqftcl*nqtkdgsk*keykkrkc*kec*iic*sssw**
sk*fkyw*crfylnysnsshyn*n*iygystnfksttncnsi---


Frame C:
DYKMVGKYHVAKQNRLRMKAKLNSRVSEIKQKMAQNKKNIKKESAKKSVESFAKAVLGNR
ANNSNTGNVASTSTIPTQVTTTRTESMVIPQTLNQPQTATQ---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE143 (SSE143Q) /CSM/SS/SSE1-B/SSE143Q.Seq.d/                        329   1e-89
CHQ620 (CHQ620Q) /CSM/CH/CHQ6-A/CHQ620Q.Seq.d/                        329   1e-89
CHN704 (CHN704Q) /CSM/CH/CHN7-A/CHN704Q.Seq.d/                        329   1e-89
CHN630 (CHN630Q) /CSM/CH/CHN6-B/CHN630Q.Seq.d/                        329   1e-89
CHL338 (CHL338Q) /CSM/CH/CHL3-B/CHL338Q.Seq.d/                        329   1e-89
CHJ855 (CHJ855Q) /CSM/CH/CHJ8-C/CHJ855Q.Seq.d/                        329   1e-89
CHH330 (CHH330Q) /CSM/CH/CHH3-B/CHH330Q.Seq.d/                        329   1e-89
CHG512 (CHG512Q) /CSM/CH/CHG5-A/CHG512Q.Seq.d/                        329   1e-89
CHE748 (CHE748Q) /CSM/CH/CHE7-B/CHE748Q.Seq.d/                        329   1e-89
CFK459 (CFK459Q) /CSM/CF/CFK4-C/CFK459Q.Seq.d/                        329   1e-89
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ550219|AZ550219.1 ENTEU85TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AZ673209|AZ673209.1 ENTIA73TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AZ541947|AZ541947.1 ENTDS75TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AZ674410|AZ674410.1 ENTKF14TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AZ546799|AZ546799.1 ENTEL88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
BH160551|BH160551.1 ENTRR66TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AZ681851|AZ681851.1 ENTIA03TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.99  1
AE006188|AE006188.1 Pasteurella multocida PM70 section 155 of 204 of the complete genome.    44  1.5  2
AC133079|AC133079.2 Mus musculus chromosome UNK clone RP24-468O18, WORKING DRAFT SEQUENCE, 8 unordered pieces.    42  3.9  1
BU114487|BU114487.1 603129953F1 CSEQCHL14 Gallus gallus cDNA clone ChEST105i13 5', mRNA sequence.    42  3.9  1
dna update 2003. 7.22
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 300,059,467
protein update 2009. 6.10
PSORT 

 psg: 0.45  gvh: 0.27  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSE143 is nuc
5' end seq. ID SSE143F
5' end seq. 
>SSE143F.Seq
CAGATTACAAAATGGTCGGTAAATATCATGTTGCTAAACAAAATCGTCTACGTATGAAGG
CTAAACTCAATTCACGTGTCTCTGAAATCAAACAAAAGATGGCTCAAAATAAAAAGAATA
TAAAAAAAGAAAGTGCTAAAAAGAGTGTTGAATCATTTGCTAAAGCAGTTCTTGGTAATA
GAGCAAATAATTCAAATACTGGTAATGTCGCTTCTACCTCAACTATTCCAACTCAAGTCA
CTACAACTAGAACTGAATCTATGGTTATTCCACAAACTTTAAATCAACCACAAACTGCAA
CTCAATAT----------
Length of 5' end seq. 308
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -