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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSE142
Library SS
(Link to library)
Clone ID SSE142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04697-1
Original site URL
Representative seq. ID SSE142E
(Link to Original site)
Representative DNA sequence 
>SSE142 (SSE142Q) /CSM/SS/SSE1-B/SSE142Q.Seq.d/
GCGAATAATAAAATAACAGATCAATCAAATTATGGTATTAATGGTTTATCCGGATATGAT
GTACATAGAATTCCCGGTTATTCACCCCAAGATTATTTCGAAACTACTGGATTTGGAAAA
GAAGGTTATGTTGGTCCAAAATCATGTTAACACTAGTAGTCTTTTTTTTTATGTTTTTTT
TCCCCCATTTTTTTAAATCTTTAATTAACTATTATTATTATTTTTTAAATTTCTTTTTTT
AGTTAGAAAATAAAAAAAATAAAA
sequence update 1998. 5. 2
Translated Amino Acid sequence 
riik*QINQIMVLMVYPDMMYIEFPVIHPKIISKLLDLEKKVMLVQNHVNTSSLFFYVFF
PPFF*ifn*llllffkflflvrk*kk*
Translated Amino Acid sequence (All Frames) 
Frame A:
annkitdqsnyginglsgydvhripgyspqdyfettgfgkegyvgpksc*h**sfflcff
spiflnl*ltiiiif*isffs*kikkik


Frame B:
riik*QINQIMVLMVYPDMMYIEFPVIHPKIISKLLDLEKKVMLVQNHVNTSSLFFYVFF
PPFF*ifn*llllffkflflvrk*kk*


Frame C:
e**nnrsiklwy*wfiri*ct*nsrlftprlfrnywiwkrrlcwskimltlvvfffmfff
phffkslinyyyyflnfff*lenkknk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI519 (SSI519Q) /CSM/SS/SSI5-A/SSI519Q.Seq.d/                        319   1e-86
SSE513 (SSE513Q) /CSM/SS/SSE5-A/SSE513Q.Seq.d/                        319   1e-86
SSE142 (SSE142Q) /CSM/SS/SSE1-B/SSE142Q.Seq.d/                        319   1e-86
SSC352 (SSC352Q) /CSM/SS/SSC3-C/SSC352Q.Seq.d/                        303   7e-82
SFK246 (SFK246Q) /CSM/SF/SFK2-B/SFK246Q.Seq.d/                         36   0.25
SHL449 (SHL449Q) /CSM/SH/SHL4-C/SHL449Q.Seq.d/                         34   0.99
SHK259 (SHK259Q) /CSM/SH/SHK2-C/SHK259Q.Seq.d/                         34   0.99
SHI715 (SHI715Q) /CSM/SH/SHI7-A/SHI715Q.Seq.d/                         34   0.99
SHI711 (SHI711Q) /CSM/SH/SHI7-A/SHI711Q.Seq.d/                         34   0.99
SHH639 (SHH639Q) /CSM/SH/SHH6-B/SHH639Q.Seq.d/                         34   0.99
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE007839|AE007839.1 Clostridium acetobutylicum ATCC824 section 327 of 356 of the complete genome.    48  0.052  1
AC142095|AC142095.1 Medicago truncatula clone mth2-14c17, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.81  1
AF012439|AF012439.1 Tetrahymena pyriformis macronuclear DNA sequence.    44  0.81  1
AF104941|AF104941.1 Tetrahymena pyriformis middle repetitive sequence.    44  0.81  1
AL929580|AL929580.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-42G15.    44  3.1  2
BZ355070|BZ355070.1 SALK_126323.44.45.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_126323.44.45.x, DNA sequence.    42  3.2  1
BE123655|BE123655.1 NXNV_150_F08_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV_150_F08 5', mRNA sequence.    42  3.2  1
BX537264|BX537264.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH211-1C4.    42  3.2  1
BX470224|BX470224.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  3.2  1
BI398002|BI398002.1 NXPV_113_C08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_113_C08 5', mRNA sequence.    42  3.2  1
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000976_356(CP000976|pid:none) Borrelia duttonii Ly, complete g...    33   3.1
protein update 2009. 3. 5
PSORT 

 psg: 0.93  gvh: 0.30  alm: 0.39  top: 0.43  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSE142 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSE142E
Full length Seq. 
>SSE142E.Seq
GCGAATAATAAAATAACAGATCAATCAAATTATGGTATTAATGGTTTATCCGGATATGAT
GTACATAGAATTCCCGGTTATTCACCCCAAGATTATTTCGAAACTACTGGATTTGGAAAA
GAAGGTTATGTTGGTCCAAAATCATGTTAACACTAGTAGTCTTTTTTTTTATGTTTTTTT
TCCCCCATTTTTTTAAATCTTTAATTAACTATTATTATTATTTTTTAAATTTCTTTTTTT
AGTTAGAAAATAAAAAAAATAAAA
Length of full length seq. 264