AFL153
Library AF
(Link to library)
Clone ID AFL153
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL153P
(Link to Original site)
Representative DNA sequence
>AFL153 (AFL153Q) /CSM/AF/AFL1-C/AFL153Q.Seq.d/
ATTTATAATATATCTTTTTTGTTAATAAAAAAGAAAGAATACCAACATGAGACTTTTATT
GTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCATTTCAAAGA
TACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGG
TAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGG
TATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAG
TAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTG
TGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTCGATGGTGA
ATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTGXXXXXXXXXXAGAAGACGA
CGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAA
GAAAATCCCAAATCCAGAATACAAAGGTGAATGGGNACNCCCATTAATTGATAACCCAGA
ATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATT
ATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAAGA
AGCTAAAGATTTCTNTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTT
TGACGACCTCGAAGCCGCCAAAGCTGAANAGAGAAAGAAAGCTGACGAAAAATTAGCTGC
CGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGA
AGAAGATTTAGTTAAAACTGANGNCAAAAAAGAAGAAGTCAAAAAATCNACCNAAAAAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
fiiylfc**KRKNTNMRLLLCLIFLVFVXNFALSTVHFKDTFDNDWESRWVVSDWHKEDG
KSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQKVDC
GGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCG---

---EDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXXPLIDNPEYAEDNELYLFNDLG
AIGFELWQVKSGSIFNNMIVXDSVEEAKDFXEKTFVANQEAEKKMFDDLEAAKAEXRKKA
DEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTXXKKEEVKKSTXK


Translated Amino Acid sequence (All Frames)
Frame A:
iynisfllikkkeyqhetfivfnflsfcfxfciinssfqryl**rlgikmgc**la*rrw
*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfsspihcke*tks*l
wwfihqvitiqirsisirw*i*ifhyvwsrclw---

---rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin**prir*rq*tlpl**sr
cyrfrimas*iwfhl*qydrxrlcrrs*rfl*kdlccqprsrkenv*rprsrqs*xekes
*rkiscrksc*krsrrs**rrrrsr*rrfs*n*xqkrrsqkixxks

Frame B:
fiiylfc**KRKNTNMRLLLCLIFLVFVXNFALSTVHFKDTFDNDWESRWVVSDWHKEDG
KSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQKVDC
GGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCG---

---EDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWXXPLIDNPEYAEDNELYLFNDLG
AIGFELWQVKSGSIFNNMIVXDSVEEAKDFXEKTFVANQEAEKKMFDDLEAAKAEXRKKA
DEKLAAEKAAEKEAEEADEEEEEVAEEDLVKTXXKKEEVKKSTXK

Frame C:
l*yiffvnkkeript*dfycv*fs*flfxilhyqqfiskiplitignqdgllvigikkmv
nqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*fsntl*rmnkkliv
vvhtssyyhpn*inqhsmvnlniplclvqmfvv---

---kttvngkpqpspiqntkvngkqrksqiqntkvngxxh*litqntlktmnstslmisv
lsvsnygklnlvpslti*ssptlskklkisxkrpllptkkpkrkclttskppklxrerkl
tkn*lpkkllkkkpkklmkkkkkslkki*lklxxkkkksknxpkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO703 (VFO703Q) /CSM/VF/VFO7-A/VFO703Q.Seq.d/ 728 0.0
VFN642 (VFN642Q) /CSM/VF/VFN6-B/VFN642Q.Seq.d/ 728 0.0
VFM885 (VFM885Q) /CSM/VF/VFM8-D/VFM885Q.Seq.d/ 728 0.0
VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/ 728 0.0
VFM276 (VFM276Q) /CSM/VF/VFM2-D/VFM276Q.Seq.d/ 728 0.0
VFL360 (VFL360Q) /CSM/VF/VFL3-C/VFL360Q.Seq.d/ 728 0.0
VFL283 (VFL283Q) /CSM/VF/VFL2-D/VFL283Q.Seq.d/ 728 0.0
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/ 728 0.0
VFK631 (VFK631Q) /CSM/VF/VFK6-B/VFK631Q.Seq.d/ 728 0.0
VFK516 (VFK516Q) /CSM/VF/VFK5-A/VFK516Q.Seq.d/ 728 0.0

own update 2002.10.30
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 728 0.0 4
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 2e-22 2
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 5e-10 3
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 62 4e-07 2
BT013428|BT013428.1 Lycopersicon esculentum clone 132068F, mRNA sequence. 62 7e-07 2
BE435540|BE435540.1 EST406618 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG27F24, mRNA sequence. 62 2e-05 1
AW932476|AW932476.1 EST358319 tomato fruit mature green, TAMU Lycopersicon esculentum cDNA clone cLEF48O8 5', mRNA sequence. 62 2e-05 1
AI771812|AI771812.1 EST252912 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED38E1, mRNA sequence. 62 2e-05 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 62 2e-05 1
AW033447|AW033447.1 EST277018 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC28B21 similar to calreticulin, putative, mRNA sequence. 62 2e-05 1
dna update 2004. 8. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 264 4e-69
BT072764_1(BT072764|pid:none) Salmo salar clone ssal-rgf-539-230... 183 6e-45
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 170 5e-41
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 169 9e-41
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 169 1e-40
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 169 2e-40
EF084103_1(EF084103|pid:none) Picea sitchensis clone WS0274_F04 ... 168 2e-40
U66344_1(U66344|pid:none) Arabidopsis thaliana calreticulin (Crt... 168 3e-40
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 168 3e-40
AC003114_8(AC003114|pid:none) Arabidopsis thaliana chromosome 1 ... 168 3e-40
protein update 2009. 4.25
PSORT

psg: 1.00 gvh: 0.66 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: mitochondrial
12.0 %: vacuolar
8.0 %: Golgi
8.0 %: nuclear
8.0 %: endoplasmic reticulum

>> prediction for AFL153 is exc

5' end seq. ID AFL153F
5' end seq.
>AFL153F.Seq
ATTTATAATATATCTTTTTTGTTAATAAAAAAGAAAGAATACCAACATGAGACTTTTATT
GTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCATTTCAAAGA
TACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGG
TAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGG
TATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAG
TAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTG
TGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTCGATGGTGA
ATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG----------
Length of 5' end seq. 461
3' end seq. ID AFL153Z
3' end seq.
>AFL153Z.Seq
----------AGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACA
AAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGNACNCC
CATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCG
GTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCG
TCNCCGACTCTGTCGAAGAAGCTAAAGATTTCTNTGAAAAGACCTTTGTTGCCAACCAAG
AAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAANAGAGAAAGAAAG
CTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAG
AAGAAGAAGAAGTCGCTGAAGAAGATTTAGTTAAAACTGANGNCAAAAAAGAAGAAGTCA
AAAAATCNACCNAAAAAGT
Length of 3' end seq. 489
Connected seq. ID AFL153P
Connected seq.
>AFL153P.Seq
ATTTATAATATATCTTTTTTGTTAATAAAAAAGAAAGAATACCAACATGAGACTTTTATT
GTGTTTAATTTTCTTAGTTTTTGTTTTNAATTTTGCATTATCAACAGTTCATTTCAAAGA
TACCTTTGATAACGATTGGGAATCAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGG
TAAATCAGGTAAATTAGTTCATACTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGG
TATTCAAACTAGTGAAGATGCTCGTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAG
TAACAAAGGTAAAGATTTAGTTCTCCAATACACTGTAAAGAATGAACAAAAAGTTGATTG
TGGTGGTTCATACATCAAGTTATTACCATCCAAATTAGATCAATCAGCATTCGATGGTGA
ATCTGAATATTCCATTATGTTTGGTCCAGATGTTTGTGGTG----------AGAAGACGA
CGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAATGGAAAGCAAA
GAAAATCCCAAATCCAGAATACAAAGGTGAATGGGNACNCCCATTAATTGATAACCCAGA
ATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATCGGTTTCGAATT
ATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCNCCGACTCTGTCGAAGA
AGCTAAAGATTTCTNTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAAAAGAAAATGTT
TGACGACCTCGAAGCCGCCAAAGCTGAANAGAGAAAGAAAGCTGACGAAAAATTAGCTGC
CGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAAGAAGTCGCTGA
AGAAGATTTAGTTAAAACTGANGNCAAAAAAGAAGAAGTCAAAAAATCNACCNAAAAAGT
Length of connected seq. 950
Full length Seq ID -
Full length Seq. -
Length of full length seq. -