SSD875
Library SS
(Link to library)
Clone ID SSD875
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16120-1
Original site URL
Representative seq. ID SSD875P
(Link to Original site)
Representative DNA sequence
>SSD875 (SSD875Q) /CSM/SS/SSD8-D/SSD875Q.Seq.d/
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANATTTTTAGAATTAATTTTTTTA
TTTGTTTTTTTTTTAATAATTGTTTAATTTGGGAAAAAAAAAAAGGTTTTTTTTTTTTTT
TANAGACAAAAGATGGAGGGAGGAAGAGAAGTAAAAAATGATATTGGTTATTAAAAATTG
AATTGATTTAAAAAXXXXXXXXXXGTATTATCATCAACAACTACATCAACAATATCATCC
ACAACTTTTGGAGGCACAATTTCAAGTACCACATCAATATATGATCCATGTTCAAATAAA
AAATGTCCAAGGANTCAACATTGTAATAACATTAATGGTTTTGCAATTTGTTCCAAAACT
GATTGTACCTCTTGTGATGATTTGAATTGTCCATCTCANGGATTAAAATGTATTTCAATT
AAAAATGAACAATTTAAAAATAATAATTGTCATAATTGTTGTGAATATATTGTTTCATGT
TCAAATTAATATTTAAAAAACAAAAAANNGAAATAAAATAAAAATAAAATTTAAATAAAA
AAAA
sequence update 1998. 9.10
Translated Amino Acid sequence
ffffffffffflxf*n*ffylfff**lfnlgkkkrfffffxdkrwreeek*kmilvikn*
IDLK---

---VLSSTTTSTISSTTFGGTISSTTSIYDPCSNKKCPRXQHCNNINGFAICSKTDCTSC
DDLNCPSXGLKCISIKNEQFKNNNCHNCCEYIVSCSN*ylknkkxk*nknki*ikk


Translated Amino Acid sequence (All Frames)
Frame A:
ffffffffffffxfleliflfvffliiv*fgkkkkvffffxrqkmeggrevkndigy*kl
n*fk---

---VLSSTTTSTISSTTFGGTISSTTSIYDPCSNKKCPRXQHCNNINGFAICSKTDCTSC
DDLNCPSXGLKCISIKNEQFKNNNCHNCCEYIVSCSN*ylknkkxk*nknki*ikk

Frame B:
ffffffffffflxf*n*ffylfff**lfnlgkkkrfffffxdkrwreeek*kmilvikn*
IDLK---

---yyhqqlhqqyhpqlleaqfqvphqymihvqiknvqgxnivitlmvlqfvpklivplv
mi*ivhlxd*nvfqlkmnnlkiiiviivvnilfhvqini*ktkxxnkikikfk*kk

Frame C:
fffffffffffxifrinfficfffnncliwekkkgfffflxtkdggrkrskk*ywllkie
li*k---

---iiinnyinniihnfwrhnfkyhini*smfk*kmskxstl**h*wfcnlfqn*lyll*
*felsisxikmyfn*k*ti*k**ls*ll*iycfmfklifkkqkxeik*k*nlnkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD875 (SSD875Q) /CSM/SS/SSD8-D/SSD875Q.Seq.d/ 662 0.0
SLA874 (SLA874Q) /CSM/SL/SLA8-D/SLA874Q.Seq.d/ 545 e-154
CHB205 (CHB205Q) /CSM/CH/CHB2-A/CHB205Q.Seq.d/ 545 e-154
CFJ865 (CFJ865Q) /CSM/CF/CFJ8-C/CFJ865Q.Seq.d/ 545 e-154
CFJ502 (CFJ502Q) /CSM/CF/CFJ5-A/CFJ502Q.Seq.d/ 545 e-154
CFH507 (CFH507Q) /CSM/CF/CFH5-A/CFH507Q.Seq.d/ 525 e-148
CFD485 (CFD485Q) /CSM/CF/CFD4-D/CFD485Q.Seq.d/ 519 e-146
SFL162 (SFL162Q) /CSM/SF/SFL1-C/SFL162Q.Seq.d/ 511 e-144
CFA530 (CFA530Q) /CSM/CF/CFA5-B/CFA530Q.Seq.d/ 504 e-142
CHC246 (CHC246Q) /CSM/CH/CHC2-B/CHC246Q.Seq.d/ 482 e-135

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(C92335) Dictyostelium discoideum slug cDNA, clone SSD875. 559 e-155 1
(AU033477) Dictyostelium discoideum slug cDNA, clone SLA874. 543 e-150 1
(BJ377568) Dictyostelium discoideum cDNA clone:ddc24i02, 3' ... 543 e-150 1
(BJ375910) Dictyostelium discoideum cDNA clone:ddc20b18, 3' ... 543 e-150 1
(BJ375797) Dictyostelium discoideum cDNA clone:ddc20c01, 3' ... 543 e-150 1
(BJ374759) Dictyostelium discoideum cDNA clone:ddc16m01, 3' ... 523 e-144 1
(BJ374449) Dictyostelium discoideum cDNA clone:ddc7j22, 3' e... 301 e-141 2
(BJ401546) Dictyostelium discoideum cDNA clone:dds23k15, 3' ... 460 e-138 2
(BJ373250) Dictyostelium discoideum cDNA clone:ddc2k07, 3' e... 502 e-138 1
(BJ377911) Dictyostelium discoideum cDNA clone:ddc26k12, 3' ... 474 e-132 2
dna update 2009. 7.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 44 0.003
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 44 0.003
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 42 0.010
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 42 0.013
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 39 0.086
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 39 0.086
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 39 0.086
(Q6DAV7) RecName: Full=DNA repair protein radC homolog; &BX9508... 35 1.6
DQ324946_1(DQ324946|pid:none) Apis cerana complementary sex dete... 35 1.6
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 35 1.6
protein update 2009. 6.10
PSORT

psg: 0.89 gvh: 0.54 alm: 0.54 top: 0.63 tms: 0.00 mit: 0.33 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
28.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SSD875 is mit

5' end seq. ID SSD875F
5' end seq.
>SSD875F.Seq
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANATTTTTAGAATTAATTTTTTTA
TTTGTTTTTTTTTTAATAATTGTTTAATTTGGGAAAAAAAAAAAGGTTTTTTTTTTTTTT
TANAGACAAAAGATGGAGGGAGGAAGAGAAGTAAAAAATGATATTGGTTATTAAAAATTG
AATTGATTTAAAAA----------
Length of 5' end seq. 194
3' end seq. ID SSD875Z
3' end seq.
>SSD875Z.Seq
----------GTATTATCATCAACAACTACATCAACAATATCATCCACAACTTTTGGAGG
CACAATTTCAAGTACCACATCAATATATGATCCATGTTCAAATAAAAAATGTCCAAGGAN
TCAACATTGTAATAACATTAATGGTTTTGCAATTTGTTCCAAAACTGATTGTACCTCTTG
TGATGATTTGAATTGTCCATCTCANGGATTAAAATGTATTTCAATTAAAAATGAACAATT
TAAAAATAATAATTGTCATAATTGTTGTGAATATATTGTTTCATGTTCAAATTAATATTT
AAAAAACAAAAAANNGAAATAAAATAAAAATAAAATTTAAATAAAAAAAA
Length of 3' end seq. 340
Connected seq. ID SSD875P
Connected seq.
>SSD875P.Seq
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTANATTTTTAGAATTAATTTTTTTA
TTTGTTTTTTTTTTAATAATTGTTTAATTTGGGAAAAAAAAAAAGGTTTTTTTTTTTTTT
TANAGACAAAAGATGGAGGGAGGAAGAGAAGTAAAAAATGATATTGGTTATTAAAAATTG
AATTGATTTAAAAA----------GTATTATCATCAACAACTACATCAACAATATCATCC
ACAACTTTTGGAGGCACAATTTCAAGTACCACATCAATATATGATCCATGTTCAAATAAA
AAATGTCCAAGGANTCAACATTGTAATAACATTAATGGTTTTGCAATTTGTTCCAAAACT
GATTGTACCTCTTGTGATGATTTGAATTGTCCATCTCANGGATTAAAATGTATTTCAATT
AAAAATGAACAATTTAAAAATAATAATTGTCATAATTGTTGTGAATATATTGTTTCATGT
TCAAATTAATATTTAAAAAACAAAAAANNGAAATAAAATAAAAATAAAATTTAAATAAAA
AAAA
Length of connected seq. 534
Full length Seq ID -
Full length Seq. -
Length of full length seq. -