SSD853
Library SS
(Link to library)
Clone ID SSD853
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SSD853Z
(Link to Original site)
Representative DNA sequence
>SSD853 (SSD853Q) /CSM/SS/SSD8-C/SSD853Q.Seq.d/
XXXXXXXXXXACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATGGGTGTCAT
AACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATT
TGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGA
ACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATAAAGGTCATACTGC
CAAACAATGTCTTGATGACCTTGGGCTCTCTGGTAGTGATCAATCAATGGGTTCTGCTGC
TGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGG
TCAATCTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAA
AAAAAAAAAGTAATAATAAT
sequence update 1998. 1. 4
Translated Amino Acid sequence
---GGSYDNAVDMWSMGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEH
AKAFIRNLIVKDPDKGHTAKQCLDDLGLSGSDQSMGSAADLHSHFAEKMKKYNDQRRGGQ
SSNN*i******kkkkkskkkk***


Translated Amino Acid sequence (All Frames)
Frame A:
---lvvhmimqsicgqwvs*pifyyvvshhsmlhlktyylkkf*plimisqnqnglmsln
mpklslet*lskiqikvilpnnvlmtlgslvvinqwvlllistlislkr*rnimtkeevv
nlqiikfnnnnnkkkkknqkkksnnn


Frame B:
---wwfi**csryvvngchnlyfimwfptilcfisklii*knfnr*l*fprtrmdscl*t
cqsfh*klncqrsr*rsycqtms**pwalw**singfcc*splsfr*kdeei**pkkrws
ifk*lnliiiiikkkkkikkkkvii


Frame C:
---GGSYDNAVDMWSMGVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEH
AKAFIRNLIVKDPDKGHTAKQCLDDLGLSGSDQSMGSAADLHSHFAEKMKKYNDQRRGGQ
SSNN*i******kkkkkskkkk***


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSD853 (SSD853Q) /CSM/SS/SSD8-C/SSD853Q.Seq.d/ 769 0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/ 722 0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/ 722 0.0
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/ 722 0.0
SSD777 (SSD777Q) /CSM/SS/SSD7-D/SSD777Q.Seq.d/ 722 0.0
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/ 722 0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/ 722 0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/ 722 0.0
SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/ 714 0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/ 706 0.0

own update 2000.12.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 722 0.0 2
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds. 76 3e-11 2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 42 9e-07 4
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 40 3e-05 6
AL974248|AL974248.1 Danio rerio genomic clone DKEY-42F14, genomic survey sequence. 50 4e-05 3
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 38 6e-05 6
BX571725|BX571725.1 Carp DNA sequence from clone carpf-118. 46 1e-04 4
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome. 36 2e-04 7
BX294164|BX294164.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-266D19. 48 2e-04 4
BX571722|BX571722.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 2e-04 7
dna update 2004. 2. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser... 247 1e-64
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso... 104 8e-22
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f... 103 2e-21
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 101 7e-21
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina... 100 1e-20
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina... 100 1e-20
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO... 100 1e-20
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c... 100 1e-20
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d... 100 1e-20
BC123625_1(BC123625|pid:none) Bos taurus calcium/calmodulin-depe... 100 1e-20
protein update 2009. 6.10
PSORT

psg: 0.75 gvh: 0.57 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for SSD853 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD853Z
3' end seq.
>SSD853Z.Seq
----------ACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATGGGTGTCAT
AACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATT
TGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGA
ACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATAAAGGTCATACTGC
CAAACAATGTCTTGATGACCTTGGGCTCTCTGGTAGTGATCAATCAATGGGTTCTGCTGC
TGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGG
TCAATCTTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCAAA
AAAAAAAAAGTAATAATAAT
Length of 3' end seq. 430
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -