NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL147
Library AF
(Link to library)
Clone ID AFL147
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11646-1
Original site URL
Representative seq. ID AFL147F
(Link to Original site)
Representative DNA sequence 
>AFL147 (AFL147Q) /CSM/AF/AFL1-B/AFL147Q.Seq.d/
GCAAATAATGCAATTAAACATGTAATTTCAAAATGNGTTGTTGGAGCATTAGTTGTTGAT
ATTTGTCAATATGGGGATGATTTCATTGAAGCANAAGCAGCAAAAACATTTACAAAGAGA
AAGAATTTANAAAAGGGTNTTGCATTCCCAACATGNGTTTCAGTTAATAATTGGGTNGGT
CATTTTTCACCATTAAAAGGTAATACNCGTNCATTGAAACAAGGNGATGTTGTAAANATT
GATTTAGGTTGNCATATTGANGGTTACATTGCAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ANNAIKHVISKXVVGALVVDICQYGDDFIEAXAAKTFTKRKNLXKGXAFPTXVSVNNWVG
HFSPLKGNTRXLKQGDVVXIDLGXHIXGYIA---
Translated Amino Acid sequence (All Frames) 
Frame A:
ANNAIKHVISKXVVGALVVDICQYGDDFIEAXAAKTFTKRKNLXKGXAFPTXVSVNNWVG
HFSPLKGNTRXLKQGDVVXIDLGXHIXGYIA---


Frame B:
qimqlnm*fqnxlleh*llifvnmgmislkxkqqkhlqrerixkrvlhsqhxfqliigxv
ifhh*kvixvh*nkxml*xli*vxilxvtl---


Frame C:
k*cn*tcnfkmxcwsisc*ylsiwg*fh*sxsskniykekefxkgxcipnmxfs**lgxs
fftikr*yxxietrxcckx*frlxy*xlhc---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL147 (AFL147Q) /CSM/AF/AFL1-B/AFL147Q.Seq.d/                        472   e-132
VFM464 (VFM464Q) /CSM/VF/VFM4-C/VFM464Q.Seq.d/                        460   e-129
VFM207 (VFM207Q) /CSM/VF/VFM2-A/VFM207Q.Seq.d/                        460   e-129
SFJ284 (SFJ284Q) /CSM/SF/SFJ2-D/SFJ284Q.Seq.d/                        460   e-129
CFH696 (CFH696Q) /CSM/CF/CFH6-D/CFH696Q.Seq.d/                        460   e-129
VSJ621 (VSJ621Q) /CSM/VS/VSJ6-A/VSJ621Q.Seq.d/                        456   e-128
VFN495 (VFN495Q) /CSM/VF/VFN4-D/VFN495Q.Seq.d/                        456   e-128
VFF687 (VFF687Q) /CSM/VF/VFF6-D/VFF687Q.Seq.d/                        456   e-128
SLA750 (SLA750Q) /CSM/SL/SLA7-C/SLA750Q.Seq.d/                        456   e-128
SFJ885 (SFJ885Q) /CSM/SF/SFJ8-D/SFJ885Q.Seq.d/                        456   e-128
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61403|U61403.1 Dictyostelium discoideum PrlA (prlA) mRNA, partial cds.   440   e-120  1
AC145034|AC145034.2 Homo sapiens chromosome 5 clone RP11-1414O21, complete sequence.    44   9e-05  2
AC139776|AC139776.2 Homo sapiens chromosome 5 clone RP11-1005E12, complete sequence.    44   9e-05  2
AL009030|AL009030.15 Human DNA sequence from clone RP1-28I24 on chromosome 6.    44   9e-05  2
BF052734|BF052734.1 EST437964 potato leaves and petioles Solanum tuberosum cDNA clone cSTB32F4 5' sequence, mRNA sequence.    42   0.14   2
BI178809|BI178809.1 EST519754 cSTE Solanum tuberosum cDNA clone cSTE16G5 5' sequence, mRNA sequence.    42   0.15   2
BE924285|BE924285.1 EST428054 potato leaves and petioles Solanum tuberosum cDNA clone cSTB29M5 5' sequence, mRNA sequence.    42   0.15   2
BF052250|BF052250.1 EST437480 potato leaves and petioles Solanum tuberosum cDNA clone cSTB31C19 5' sequence, mRNA sequence.    42   0.16   2
BE471638|BE471638.1 EST416491 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA29J22, mRNA sequence.    42   0.16   2
BE343505|BE343505.1 EST408667 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA25K17, mRNA sequence.    42   0.17   2
dna update 2004. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXG4) RecName: Full=Proliferation-associated protein A;            160   1e-38
BT044812_1(BT044812|pid:none) Salmo salar clone ssal-rgf-504-156...    95   8e-19
BT048971_1(BT048971|pid:none) Salmo salar clone ssal-eve-513-197...    93   2e-18
BC056591_1(BC056591|pid:none) Danio rerio proliferation-associat...    90   3e-17
AL591365_2(AL591365|pid:none) Zebrafish DNA sequence from clone ...    90   3e-17
BT045606_1(BT045606|pid:none) Salmo salar clone ssal-rgf-526-125...    89   5e-17
AF056116_11(AF056116|pid:none) Fugu rubripes serine/threonine ki...    88   1e-16
AF049236_5(AF049236|pid:none) Arabidopsis thaliana putative tran...    87   2e-16
AK316789_1(AK316789|pid:none) Arabidopsis thaliana AT3G51800 mRN...    87   2e-16
AY449462_19(AY449462|pid:none) Oikopleura dioica clone BACOIKO00...    86   3e-16
protein update 2009. 4.25
PSORT 

 psg: 0.92  gvh: 0.37  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for AFL147 is cyt
5' end seq. ID AFL147F
5' end seq. 
>AFL147F.Seq
GCAAATAATGCAATTAAACATGTAATTTCAAAATGNGTTGTTGGAGCATTAGTTGTTGAT
ATTTGTCAATATGGGGATGATTTCATTGAAGCANAAGCAGCAAAAACATTTACAAAGAGA
AAGAATTTANAAAAGGGTNTTGCATTCCCAACATGNGTTTCAGTTAATAATTGGGTNGGT
CATTTTTCACCATTAAAAGGTAATACNCGTNCATTGAAACAAGGNGATGTTGTAAANATT
GATTTAGGTTGNCATATTGANGGTTACATTGCAG----------
Length of 5' end seq. 274
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -