>SSD807 (SSD807Q) /CSM/SS/SSD8-A/SSD807Q.Seq.d/
XXXXXXXXXXTGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTACCC
CATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATA
TACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTA
AAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAA
TTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGC
CATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTT
TAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAG
CAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATT
GTGATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAA
TTAATAAAAAAAAAAAAAAA

---DKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSK
TVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCL
ASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*ti
nkkkkk

Frame A:
---DKYYIFGDNGVRCVTTPCASTDAVLLNIRTKQTVSDILMPYSKNVGKYFDSAWLGSK
TVRSDDYGLIGQGTFSSGKITISNAFIHLPDPIGKCDSLPLLKCPGGSIMTYSRNENRCL
ASPTCTQSSFCTLGMPLCPAGYRLDQFRATEANGCPKYYCDPTFVCKTH*flfllif*ti
nkkkkk


Frame B:
---iniiflvimvsdvslphvhqqmqfy*isvlnkllviyschiqrtlvnililhg*dlk
qldqmtmv*svkvhsvveklqyqmlsfiyqiqlvnvihchy*nvqvvrl*htlvmkivv*
llqlalnlhsvpwvchfvqqviv*inseqlkqmdvqniiviqplfvkhinfffc*fskql
ikkkk


Frame C:
---*ilyfw**wcqmchypmcinrcsfieypy*tnc**ythaifkerw*if*fcmvri*n
s*ir*lwfnrsryiq*wknynikcfhsftrsnw*m*fiaiikmsrwfdydils**kslfs
fsnlhsifilylgyatlssrlsfrsiqsn*skwmskill*snlcl*ntlisffvnflnn*
*kkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD807 (SSD807Q) /CSM/SS/SSD8-A/SSD807Q.Seq.d/                       1019   0.0
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                       1013   0.0
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                       1013   0.0
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                       1013   0.0
SSM240 (SSM240Q) /CSM/SS/SSM2-B/SSM240Q.Seq.d/                       1013   0.0
SSK489 (SSK489Q) /CSM/SS/SSK4-D/SSK489Q.Seq.d/                       1013   0.0
SSK447 (SSK447Q) /CSM/SS/SSK4-B/SSK447Q.Seq.d/                       1013   0.0
SSJ893 (SSJ893Q) /CSM/SS/SSJ8-D/SSJ893Q.Seq.d/                       1013   0.0
SSJ224 (SSJ224Q) /CSM/SS/SSJ2-A/SSJ224Q.Seq.d/                       1013   0.0
SSI834 (SSI834Q) /CSM/SS/SSI8-B/SSI834Q.Seq.d/                       1013   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   948   0.0    12
AC006690|AC006690.3 Caenorhabditis elegans cosmid T24F3, complete sequence.    40   0.003  2
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   0.11   8
AL162851|AL162851.7 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-186M12.    48   0.13   1
AL163204|AL163204.1 Homo sapiens genomic DNA, chromosome 21q, section 3/105.    48   0.13   1
AL109748|AL109748.2 Homo sapiens chromosome 21 PAC RPCIP704M13256Q2.    48   0.13   1
AL050303|AL050303.4 Homo sapiens chromosome 21 PAC RPCIP704G14214Q2.    48   0.13   1
AC106402|AC106402.4 Rattus norvegicus clone CH230-130H6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   0.20   2
AL445884|AL445884.4 Human chromosome 14 DNA sequence BAC R-419C10 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    36   0.36   3
AK067149|AK067149.1 Oryza sativa (japonica cultivar-group) cDNA clone:J013097G10, full insert sequence.    46   0.53   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   356   3e-97
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   224   1e-57
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   155   5e-37
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    78   2e-13
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    43   0.005
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    41   0.018
AL033501_6(AL033501|pid:none) C.albicans cosmid Ca41C10.  &T1823...    37   0.35
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    36   0.59
FM992688_766(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   1.3
AB267386_1(AB267386|pid:none) Nepenthes alata NaTLP1c mRNA for t...    34   2.2

 psg: 0.75  gvh: 0.40  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSD807 is cyt

>SSD807Z.Seq
----------TGATAAATATTATATTTTTGGTGATAATGGTGTCAGATGTGTCACTACCC
CATGTGCATCAACAGATGCAGTTTTATTGAATATCCGTACTAAACAAACTGTTAGTGATA
TACTCATGCCATATTCAAAGAACGTTGGTAAATATTTTGATTCTGCATGGTTAGGATCTA
AAACAGTTAGATCAGATGACTATGGTTTAATCGGTCAAGGTACATTCAGTAGTGGAAAAA
TTACAATATCAAATGCTTTCATTCATTTACCAGATCCAATTGGTAAATGTGATTCATTGC
CATTATTAAAATGTCCAGGTGGTTCGATTATGACATACTCTCGTAATGAAAATCGTTGTT
TAGCTTCTCCAACTTGCACTCAATCTTCATTCTGTACCTTGGGTATGCCACTTTGTCCAG
CAGGTTATCGTTTAGATCAATTCAGAGCAACTGAAGCAAATGGATGTCCAAAATATTATT
GTGATCCAACCTTTGTTTGTAAAACACATTAATTTCTTTTTTTGTTAATTTTCTAAACAA
TTAATAAAAAAAAAAAAAAA