>SSD803 (SSD803Q) /CSM/SS/SSD8-A/SSD803Q.Seq.d/
XXXXXXXXXXGGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCAT
TAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTT
TCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATC
ATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAA
ACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATG
ATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGG
GTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTG
GTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGA
GAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAA
ATAATAATTTCTAATTGTATAAAATAAAAAAAAAAA

---ATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDH
GVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWG
TSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknkn
nnf*lykikkk

Frame A:
---ATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDH
GVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWG
TSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knknkn
nnf*lykikkk


Frame B:
---qplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwim
vf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgv
phgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikkikiki
iisncik*kkk


Frame C:
---nh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igsw
cfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgy
lmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*k*k*
*fliv*nkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD803 (SSD803Q) /CSM/SS/SSD8-A/SSD803Q.Seq.d/                       1013   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                       1011   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                       1011   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1011   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                       1011   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1011   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1011   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1011   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                       1011   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1011   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.  1011   0.0    1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   751   0.0    3
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   458   e-141  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88   6e-37  5
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88   2e-29  5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    76   6e-29  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82   1e-11  1
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds.    56   5e-08  2
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46   5e-07  3
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50   4e-06  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   286   2e-76
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   152   5e-36
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   152   5e-36
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   138   1e-31
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   136   3e-31
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   136   5e-31
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...   135   8e-31
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   135   8e-31
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...   135   8e-31
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...   135   8e-31

 psg: 0.81  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSD803 is cyt

>SSD803Z.Seq
----------GGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCAT
TAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTT
TCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATC
ATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAA
ACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATG
ATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGG
GTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTG
GTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAAAATGAATAGGA
GAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAATAAAAATAAAA
ATAATAATTTCTAATTGTATAAAATAAAAAAAAAAA