SSD778
Library SS
(Link to library)
Clone ID SSD778
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04916-1
Original site URL
Representative seq. ID SSD778E
(Link to Original site)
Representative DNA sequence
>SSD778 (SSD778Q) /CSM/SS/SSD7-D/SSD778Q.Seq.d/
GTATAAAATGAAAAATAAAATCTATTGCAAAAAAGAAAATAAAGAATTAAAGATGGAAAA
AAAATTACCAATGGTAATTAGAAAAATAGCACCAAAGTACCCTGAAAAACCAATAGAGGA
TTTTTTAAAACAAAATGTTTTTTATTTAAACCATTATTATGAAAATTGTGGTGGCTTGAA
GAATTATAAAGAAATAATATTTACTGAAGAACTACTTTCGTTAAAACAAACAGATGCAGC
AAAAGTTTTGAATATTACAACGAAATCTCTTTTAAAATTATTAAAACATGCAATCAATGA
AACAGATGGTTTATCGGAATACTACAATAATAAAAGAAAAATAATATGGCCACGTAGAAC
TGTAACTTCACCATTAATGGTATATGTTTATACAAACAAAGGTATATCTGTAAAATGTGT
TTTTAAAAATGAAAATAAAATCTAGATTTTTAAATGTGTTTAAAACTAAAACTAAAAAA
sequence update 1997.10.25
Translated Amino Acid sequence
YKMKNKIYCKKENKELKMEKKLPMVIRKIAPKYPEKPIEDFLKQNVFYLNHYYENCGGLK
NYKEIIFTEELLSLKQTDAAKVLNITTKSLLKLLKHAINETDGLSEYYNNKRKIIWPRRT
VTSPLMVYVYTNKGISVKCVFKNENKI*ifkcv*n*n*k


Translated Amino Acid sequence (All Frames)
Frame A:
v*nek*nllqkrk*rikdgkkitngn*knstkvp*ktnrgffktkcflfkpll*klwwle
el*rnniy*rttfvktnrcsksfeyyneisfkiiktcnq*nrwfigilq**kknnmat*n
cnftingiclykqryickmcf*k*k*nldf*mclklklk


Frame B:
YKMKNKIYCKKENKELKMEKKLPMVIRKIAPKYPEKPIEDFLKQNVFYLNHYYENCGGLK
NYKEIIFTEELLSLKQTDAAKVLNITTKSLLKLLKHAINETDGLSEYYNNKRKIIWPRRT
VTSPLMVYVYTNKGISVKCVFKNENKI*ifkcv*n*n*k


Frame C:
ik*kiksiakkkikn*rwkknyqw*lek*hqstlknq*rif*nkmffi*tiimkivva*r
iikk*yllknyfr*nkqmqqkf*ilqrnlf*ny*nmqsmkqmvyrnttiikek*yghvel
*lhh*wymfiqtkvyl*nvflkmkiksrflnvfktktkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSB380 (VSB380Q) /CSM/VS/VSB3-D/VSB380Q.Seq.d/ 704 0.0
SSD778 (SSD778Q) /CSM/SS/SSD7-D/SSD778Q.Seq.d/ 704 0.0
VSG137 (VSG137Q) /CSM/VS/VSG1-B/VSG137Q.Seq.d/ 38 0.12
VSC705 (VSC705Q) /CSM/VS/VSC7-A/VSC705Q.Seq.d/ 38 0.12
VSF553 (VSF553Q) /CSM/VS/VSF5-C/VSF553Q.Seq.d/ 36 0.47
SSJ183 (SSJ183Q) /CSM/SS/SSJ1-D/SSJ183Q.Seq.d/ 36 0.47
SSG550 (SSG550Q) /CSM/SS/SSG5-C/SSG550Q.Seq.d/ 36 0.47
SSB338 (SSB338Q) /CSM/SS/SSB3-B/SSB338Q.Seq.d/ 36 0.47
SHL704 (SHL704Q) /CSM/SH/SHL7-A/SHL704Q.Seq.d/ 36 0.47
SHK821 (SHK821Q) /CSM/SH/SHK8-A/SHK821Q.Seq.d/ 36 0.47

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence. 464 e-163 2
BQ007497|BQ007497.1 UI-1-BC1-aiw-f-02-0-UI.s1 NCI_CGAP_Pl2 Homo sapiens cDNA clone UI-1-BC1-aiw-f-02-0-UI 3', mRNA sequence. 52 0.006 1
U42844|U42844.1 Caenorhabditis elegans cosmid C08A9. 36 0.007 4
BU498030|BU498030.1 PfESToab91g03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.025 3
BQ451420|BQ451420.1 PfESToaa98h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 38 0.025 3
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 34 0.033 10
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence. 32 0.069 9
CC283815|CC283815.1 CH261-16K20_RM1.1 CH261 Gallus gallus genomic clone CH261-16K20, DNA sequence. 38 0.12 2
AC084770|AC084770.1 Homo sapiens chromosome 4 clone RP11-1151G9 map 4, LOW-PASS SEQUENCE SAMPLING. 32 0.16 5
BI327404|BI327404.1 AR078D08iTHYED08S Infected Porcine Thymus cDNA library Sus scrofa cDNA, mRNA sequence. 34 0.17 2
dna update 2003. 8.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL445564_101(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ... 35 1.1
AE015927_647(AE015927|pid:none) Clostridium tetani E88, complete... 33 3.3
AF486555_2(AF486555|pid:none) Campylobacter jejuni strain RM2232... 32 5.6
(Q73QJ2) RecName: Full=Arginine deiminase; Short=ADI; ... 32 5.6
CP001321_1548(CP001321|pid:none) Haemophilus parasuis SH0165, co... 32 7.3
I38186(I38186) RNA polymerase II largest subunit - human &X7487... 32 9.5
A28490(A28490;A23566) DNA-directed RNA polymerase (EC 2.7.7.6) I... 32 9.5
DQ069432_1(DQ069432|pid:none) Yucca schidigera RNA polymerase al... 32 9.5
(P24928) RecName: Full=DNA-directed RNA polymerase II subunit RP... 32 9.5
AK293777_1(AK293777|pid:none) Homo sapiens cDNA FLJ53860 complet... 32 9.5
protein update 2009. 3. 5
PSORT

psg: 0.33 gvh: 0.32 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSD778 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD778E
Full length Seq.
>SSD778E.Seq
GTATAAAATGAAAAATAAAATCTATTGCAAAAAAGAAAATAAAGAATTAAAGATGGAAAA
AAAATTACCAATGGTAATTAGAAAAATAGCACCAAAGTACCCTGAAAAACCAATAGAGGA
TTTTTTAAAACAAAATGTTTTTTATTTAAACCATTATTATGAAAATTGTGGTGGCTTGAA
GAATTATAAAGAAATAATATTTACTGAAGAACTACTTTCGTTAAAACAAACAGATGCAGC
AAAAGTTTTGAATATTACAACGAAATCTCTTTTAAAATTATTAAAACATGCAATCAATGA
AACAGATGGTTTATCGGAATACTACAATAATAAAAGAAAAATAATATGGCCACGTAGAAC
TGTAACTTCACCATTAATGGTATATGTTTATACAAACAAAGGTATATCTGTAAAATGTGT
TTTTAAAAATGAAAATAAAATCTAGATTTTTAAATGTGTTTAAAACTAAAACTAAAAAA
Length of full length seq. 479