>SSD777 (SSD777Q) /CSM/SS/SSD7-D/SSD777Q.Seq.d/
XXXXXXXXXXGAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGT
TTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATAACCTA
TATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAA
AATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGC
CAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACA
ATGTTTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCT
CCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATC
TTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCCAAAAAAAA
AAAGTAATAATAATAAAAAAAAAAAAAAAAAAATCTAAAAATAAATTAATGTAAACAATA
GTAACATCAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA

---ALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKI
LTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCFDDLWLSGSDQSIGSAADLH
SHFAEKMKKYNDQRRGGQSSNN*i******kkkkkskkkk****kkkkknlkin*ckq**
hqnkkkkkkkkk

Frame A:
---khwkqvvvhqimlhqkf*lvvhmimqsicgqlvs*pifyyvvshhsmlhlktyylkk
f*plimisqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinqlvlllis
tlislkr*rnimtkeevvnlqiikfnnnnnkkkkknpkkksnnnkkkkkki*k*invnns
nikikkkkkkkk


Frame B:
---signklwytrlcctrsfnwwfi**csryvvnwchnlyfimwfptilcfisklii*kn
fnr*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtmf**plalw**sinwfcc*sp
lsfr*kdeei**pkkrwsifk*lnliiiiikkkkkiqkkkviiikkkkkksknklm*tiv
tsk*kkkkkkkk


Frame C:
---ALETSCGTPDYVAPEVLTGGSYDNAVDMWSIGVITYILLCGFPPFYASSQNLLFEKI
LTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCFDDLWLSGSDQSIGSAADLH
SHFAEKMKKYNDQRRGGQSSNN*i******kkkkkskkkk****kkkkknlkin*ckq**
hqnkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD777 (SSD777Q) /CSM/SS/SSD7-D/SSD777Q.Seq.d/                        876   0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        860   0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        860   0.0
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        860   0.0
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        860   0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        860   0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                        860   0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                        837   0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                        813   0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                        801   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   860   0.0    3
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.    84   2e-19  3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    46   2e-08  4
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   2e-08  3
AB118103|AB118103.1 Entamoeba histolytica gene for hypothetical protein, complete cds, clone:Eh-2109.    44   2e-08  3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   5e-08  2
AU083681|AU083681.1 Cryptomeria japonica mRNA, clone:CC0359, 5' end, expressed in inner bark.    44   1e-05  2
BX511187|BX511187.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-117M22.    38   3e-05  7
BH146759|BH146759.1 ENTPS59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   4e-05  2
BH164301|BH164301.1 ENTSK07TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   4e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   293   2e-78
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   141   1e-32
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   138   1e-31
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   132   5e-30
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...   132   7e-30
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...   132   9e-30
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...   132   9e-30
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...   132   9e-30
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...   132   9e-30
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d...   132   9e-30

 psg: 0.75  gvh: 0.57  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SSD777 is cyt

>SSD777Z.Seq
----------GAAGCATTGGAAACAAGTTGTGGTACACCAGATTATGTTGCACCAGAAGT
TTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAATTGGTGTCATAACCTA
TATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAAACTTATTATTTGAAAA
AATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGC
CAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACA
ATGTTTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCT
CCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATC
TTCAAATAATTAAATTTAATAATAATAATAATAAAAAAAAAAAAAAAAATCCAAAAAAAA
AAAGTAATAATAATAAAAAAAAAAAAAAAAAAATCTAAAAATAAATTAATGTAAACAATA
GTAACATCAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAA