NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD708
Library SS
(Link to library)
Clone ID SSD708
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01014-1
Original site URL
Representative seq. ID SSD708E
(Link to Original site)
Representative DNA sequence 
>SSD708 (SSD708Q) /CSM/SS/SSD7-A/SSD708Q.Seq.d/
CAAAGATCCAAATAGTAAACTCTATCGTTACTCAAACTATCTCCTTAGTAAAACTTTATT
CCGTGTCGCTTTGCAAACCATCCTCGTTAATCCATTGGATGTTTTGCATTCTCAATATCC
ANGTATCCTTTTAGATAGTTGGTTAAATGGTTCCATACCTGTACCTGTTGCTCAGAATCC
AATCTCATTGGCAATCGATATTTATCGCTCAAATAATAATAGTATAACTAAATTCTTTAA
TGGTGTAATTCCATTATTTTTTTGTAAGATTTTCGAAGATTTTTGTGAGCAATGTGATGT
TAGTGATATTGATGATTATGAAGATGACGATATTTATGCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
sequence update 1997.10.18
Translated Amino Acid sequence 
KDPNSKLYRYSNYLLSKTLFRVALQTILVNPLDVLHSQYPXILLDSWLNGSIPVPVAQNP
ISLAIDIYRSNNNSITKFFNGVIPLFFCKIFEDFCEQCDVSDIDDYEDDDIYA*kkkkkk
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qrsk**tlsllklsp**nfipcrfanhpr*sigcfafsisxypfr*lvkwfhtctccses
nlignrylslk***yn*il*wcnsiifl*dfrrfl*am*c**y**l*r*rylclkkkkkk
kkkk


Frame B:
KDPNSKLYRYSNYLLSKTLFRVALQTILVNPLDVLHSQYPXILLDSWLNGSIPVPVAQNP
ISLAIDIYRSNNNSITKFFNGVIPLFFCKIFEDFCEQCDVSDIDDYEDDDIYA*kkkkkk
kkkk


Frame C:
kiqivnsivtqtislvklysvslckpsslihwmfcilnixvsf*ivg*mvpylylllriq
shwqsifiaqiiiv*lnslmv*fhyffvrfskifvsnvmlvilmimkmtifmlkkkkkkk
kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD708 (SSD708Q) /CSM/SS/SSD7-A/SSD708Q.Seq.d/                        628   e-179
SFJ535 (SFJ535Q) /CSM/SF/SFJ5-B/SFJ535Q.Seq.d/                        351   5e-96
VSG364 (VSG364Q) /CSM/VS/VSG3-C/VSG364Q.Seq.d/                         40   0.023
SSM574 (SSM574Q) /CSM/SS/SSM5-D/SSM574Q.Seq.d/                         40   0.023
SSD861 (SSD861Q) /CSM/SS/SSD8-C/SSD861Q.Seq.d/                         40   0.023
CHI249 (CHI249Q) /CSM/CH/CHI2-C/CHI249Q.Seq.d/                         40   0.023
CHE231 (CHE231Q) /CSM/CH/CHE2-B/CHE231Q.Seq.d/                         38   0.091
SSC381 (SSC381Q) /CSM/SS/SSC3-D/SSC381Q.Seq.d/                         36   0.36
SSA403 (SSA403Q) /CSM/SS/SSA4-A/SSA403Q.Seq.d/                         36   0.36
VSJ171 (VSJ171Q) /CSM/VS/VSJ1-C/VSJ171Q.Seq.d/                         34   1.4
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI701616|BI701616.1 sai17h12.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3815 5' similar to TR:O80678 O80678 PUTATIVE RNA-BINDING PROTEIN. ;, mRNA sequence.    46  0.30  1
AE006701|AE006701.1 Sulfolobus solfataricus section 60 of 272 of the complete genome.    46  0.30  1
BI701829|BI701829.1 sai20g08.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-3784 5' similar to TR:O80678 O80678 PUTATIVE RNA-BINDING PROTEIN. ;, mRNA sequence.    46  0.30  1
BG043151|BG043151.1 st97d06.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-155 5' similar to TR:O80678 O80678 PUTATIVE RNA-BINDING PROTEIN. ;, mRNA sequence.    46  0.30  1
BI469404|BI469404.1 sai11e07.y1 Gm-c1053 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1053-2917 5' similar to TR:O80678 O80678 PUTATIVE RNA-BINDING PROTEIN. ;, mRNA sequence.    46  0.30  1
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    40  2.4  2
AZ203361|AZ203361.1 SP_0077_B2_C08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=77 Col=16 Row=F, DNA sequence.    32  2.6  2
AC124156|AC124156.3 Equus caballus clone CH241-280K8, complete sequence.    44  2.9  3
BM066684|BM066684.1 KS07017B10 KS07 Capsicum annuum cDNA, mRNA sequence.    42  4.7  1
AU087667|AU087667.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn5434.    42  4.7  1
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR543861_1235(CR543861|pid:none) Acinetobacter sp. ADP1 complete...    32   9.0
protein update 2009. 3. 5
PSORT 

 psg: 0.67  gvh: 0.63  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSD708 is nuc
5' end seq. ID SSD708F
5' end seq. 
>SSD708F.Seq
CAAAGATCCAAATAGTAAACTCTATCGTTACTCAAACTATCTCCTTAGTAAAACTTTATT
CCGTGTCGCTTTGCAAACCATCCTCGTTAATCCATTCGATGTTTTGCATTCTCAATATCC
ACGTATCCTTTTAGATAGTTGGTTAAATGGTTCCATACCTGTACCTGTTGCTCAGAATCC
AATCTCATTGGCAATCGATATCTATCGCTCAAATAATAATAGTATAACTAAATTCTTTAA
TGGTGTAATTCCATTATTCTTTTGTAAGATTTTCGAAGATTTTTGTGAGCAATGTGATGT
TAGTGATATTGATGATTATGAAGATGACGATATTTATGCTTAAAAAAAAAAAA-------
---
Length of 5' end seq. 353
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD708E
Full length Seq. 
>SSD708E.Seq
CAAAGATCCAAATAGTAAACTCTATCGTTACTCAAACTATCTCCTTAGTAAAACTTTATT
CCGTGTCGCTTTGCAAACCATCCTCGTTAATCCATTGGATGTTTTGCATTCTCAATATCC
ANGTATCCTTTTAGATAGTTGGTTAAATGGTTCCATACCTGTACCTGTTGCTCAGAATCC
AATCTCATTGGCAATCGATATTTATCGCTCAAATAATAATAGTATAACTAAATTCTTTAA
TGGTGTAATTCCATTATTTTTTTGTAAGATTTTCGAAGATTTTTGTGAGCAATGTGATGT
TAGTGATATTGATGATTATGAAGATGACGATATTTATGCTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Length of full length seq. 374