NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL136
Library AF
(Link to library)
Clone ID AFL136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11697-1
Original site URL
Representative seq. ID AFL136P
(Link to Original site)
Representative DNA sequence 
>AFL136 (AFL136Q) /CSM/AF/AFL1-B/AFL136Q.Seq.d/
TTAAATATTACTAATGAAGAATCATCACCATTATCAAAAAAGAGAAGGTTAAAAAAGAAA
TCAAAAAAGAANACAACATTATNAAAGGAATTATTNACAAAATATTATGCTCCATTTTTA
GNTCATCCAATTTCAAAATTATTAATTATAATATTCTTTATTGCAATGTTATTGNNNNCA
ATAAATNATGCATATCAAATTCCAATTGGTTTAGATCAAAAGGTTGCACNTACCAAGAAA
CTCTNATCTTCAAGCTTATTTCACAAATATGAATCAATTCTTAGAGGTTGGACCACCAAT
GTATATATGTTGTAAAAGGAAATTATGATTTCTCCATACCATCAATTCAAAATCAATTTT
GTACAGNAXXXXXXXXXXGNTNANATTGCAAGTACATTCANCANATCACCAAAACATTAT
TCAANAGATGAAAAGGTTAAATTTGCAANATCACAAANGGGTGCAAACANATTTAGTGGT
ATNTTTATCNCNAAACNTTTAGGTTGTGNAGNTTTAGCTTTTTCNCAATCNGAAATCTTN
ATCANANACTATTTCAAAATGTATATCAGTATNTGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kyy**riitiikkekvkkeikkexnixkgiixkilcsifxssnfkiinynilycnvixxn
kxcisnsnwfrskgctyqetlifklisqi*ins*RLDHQCIYVVKGNYDFSIPSIQNQFC
TX---

---XXIASTFXXSPKHYSXDEKVKFAXSQXGANXFSGXFIXKXLGCXXLAFSQSEIXIXX
YFKMYISXC
Translated Amino Acid sequence (All Frames) 
Frame A:
lnitneessplskkrrlkkkskkxttlxkelxtkyyapflxhpisklliiiffiamllxx
inxayqipigldqkvaxtkklxssslfhkyesilrgwttnvyml*keimispyhqfkinf
vq---

---XXIASTFXXSPKHYSXDEKVKFAXSQXGANXFSGXFIXKXLGCXXLAFSQSEIXIXX
YFKMYISXC

Frame B:
*illmknhhhyqkreg*krnqkrxqhyxrnyxqnimlhf*xiqfqny*l*ysllqcyxxq
*xmhikfqlv*ikrlhxprnsxlqayftnmnqflevgppmyicckrkl*flhtinsksil
yx---

---xxlqvhsxxhqniiqxmkrlnlqxhkxvqtxlvvxlsxnx*vvxx*lfxnxksxsxt
iskcisvx

Frame C:
kyy**riitiikkekvkkeikkexnixkgiixkilcsifxssnfkiinynilycnvixxn
kxcisnsnwfrskgctyqetlifklisqi*ins*RLDHQCIYVVKGNYDFSIPSIQNQFC
TX---

---xxckyixxitktlfxr*kg*icxitxgckxi*wyxyxxtfrlxxfsffxixnlxxxl
fqnvyqyx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFL136 (AFL136Q) /CSM/AF/AFL1-B/AFL136Q.Seq.d/                        751   0.0
CFE234 (CFE234Q) /CSM/CF/CFE2-B/CFE234Q.Seq.d/                        490   e-137
CFB741 (CFB741Q) /CSM/CF/CFB7-B/CFB741Q.Seq.d/                        456   e-127
CHE457 (CHE457Q) /CSM/CH/CHE4-C/CHE457Q.Seq.d/                        418   e-116
CHC306 (CHC306Q) /CSM/CH/CHC3-A/CHC306Q.Seq.d/                        301   6e-81
SSC435 (SSC435Q) /CSM/SS/SSC4-B/SSC435Q.Seq.d/                        250   2e-65
SLB571 (SLB571Q) /CSM/SL/SLB5-C/SLB571Q.Seq.d/                        250   2e-65
SHG673 (SHG673Q) /CSM/SH/SHG6-D/SHG673Q.Seq.d/                        250   2e-65
SSC781 (SSC781Q) /CSM/SS/SSC7-D/SSC781Q.Seq.d/                        196   3e-49
CHN149 (CHN149Q) /CSM/CH/CHN1-C/CHN149Q.Seq.d/                         50   4e-05
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   0.003  9
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    40   0.005  7
CR384103|CR384103.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   0.039  1
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.21   7
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    36   0.24   7
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.27   9
AC010933|AC010933.3 Homo sapiens chromosome 3 clone RP11-203M24 map 3, LOW-PASS SEQUENCE SAMPLING.    30   0.42   9
AC121244|AC121244.12 Medicago truncatula clone mth2-31b9, complete sequence.    34   0.44   4
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    38   0.48   5
BH957653|BH957653.1 odf78g10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46   0.61   1
dna update 2004. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF202725_1(AF202725|pid:none) Dictyostelium discoideum NPC1 prot...    68   1e-10
DQ885491_1(DQ885491|pid:none) Arabidopsis halleri subsp. halleri...    43   0.007
AC025815_1(AC025815|pid:none) Arabidopsis thaliana chromosome 1 ...    42   0.009
AC007534_1(AC007534|pid:none) Genomic sequence for Arabidopsis t...    42   0.009
DQ885512_1(DQ885512|pid:none) Arabidopsis lyrata subsp. petraea ...    42   0.009
AL606694_11(AL606694|pid:none) Oryza sativa genomic DNA, chromos...    40   0.043
AM475051_1(AM475051|pid:none) Vitis vinifera contig VV78X161773....    39   0.072
AL035539_12(AL035539|pid:none) Arabidopsis thaliana DNA chromoso...    39   0.073
BC151276_1(BC151276|pid:none) Bos taurus Niemann-Pick disease, t...    38   0.21
AF299073_1(AF299073|pid:none) Bos taurus Niemann-Pick type C1 di...    38   0.21
protein update 2009. 4.25
PSORT 

 psg: 0.69  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for AFL136 is cyt
5' end seq. ID AFL136F
5' end seq. 
>AFL136F.Seq
TTAAATATTACTAATGAAGAATCATCACCATTATCAAAAAAGAGAAGGTTAAAAAAGAAA
TCAAAAAAGAANACAACATTATNAAAGGAATTATTNACAAAATATTATGCTCCATTTTTA
GNTCATCCAATTTCAAAATTATTAATTATAATATTCTTTATTGCAATGTTATTGNNNNCA
ATAAATNATGCATATCAAATTCCAATTGGTTTAGATCAAAAGGTTGCACNTACCAAGAAA
CTCTNATCTTCAAGCTTATTTCACAAATATGAATCAATTCTTAGAGGTTGGACCACCAAT
GTATATATGTTGTAAAAGGAAATTATGATTTCTCCATACCATCAATTCAAAATCAATTTT
GTACAGNA----------
Length of 5' end seq. 368
3' end seq. ID AFL136Z
3' end seq. 
>AFL136Z.Seq
----------GNTNANATTGCAAGTACATTCANCANATCACCAAAACATTATTCAANAGA
TGAAAAGGTTAAATTTGCAANATCACAAANGGGTGCAAACANATTTAGTGGTATNTTTAT
CNCNAAACNTTTAGGTTGTGNAGNTTTAGCTTTTTCNCAATCNGAAATCTTNATCANANA
CTATTTCAAAATGTATATCAGTATNTGT
Length of 3' end seq. 198
Connected seq. ID AFL136P
Connected seq. 
>AFL136P.Seq
TTAAATATTACTAATGAAGAATCATCACCATTATCAAAAAAGAGAAGGTTAAAAAAGAAA
TCAAAAAAGAANACAACATTATNAAAGGAATTATTNACAAAATATTATGCTCCATTTTTA
GNTCATCCAATTTCAAAATTATTAATTATAATATTCTTTATTGCAATGTTATTGNNNNCA
ATAAATNATGCATATCAAATTCCAATTGGTTTAGATCAAAAGGTTGCACNTACCAAGAAA
CTCTNATCTTCAAGCTTATTTCACAAATATGAATCAATTCTTAGAGGTTGGACCACCAAT
GTATATATGTTGTAAAAGGAAATTATGATTTCTCCATACCATCAATTCAAAATCAATTTT
GTACAGNA----------GNTNANATTGCAAGTACATTCANCANATCACCAAAACATTAT
TCAANAGATGAAAAGGTTAAATTTGCAANATCACAAANGGGTGCAAACANATTTAGTGGT
ATNTTTATCNCNAAACNTTTAGGTTGTGNAGNTTTAGCTTTTTCNCAATCNGAAATCTTN
ATCANANACTATTTCAAAATGTATATCAGTATNTGT
Length of connected seq. 566
Full length Seq ID -
Full length Seq. -
Length of full length seq. -