>SSD703 (SSD703Q) /CSM/SS/SSD7-A/SSD703Q.Seq.d/
XXXXXXXXXXTTAATTTCATCAATGGAGGAACAAGATCAAAATAGAAATGATTGTAATAG
TAAAGATATCGATATGGAAGATATTAATAGTCCAGCATCTTCAAAATTTAGTTTTATTAA
AATTTCAAAAGATAATAAAATATTTTCTGGTAGATTTTTAAATAAATTATTATCAGATAA
TAGAGAACCTTTTTTTCAACTGAAAATATTAAAGATTTGGAATCAAATTCAATTACAACT
TTATTAAAATTACCACATTTTAATAATGAATGTATTATTGATCCTGATTTTTCTGTATTA
TTATCAACTGATTTCAAAGAAAATTGTAAAGAGGATAATAGAAAATGGGTAATACCGGTT
TCAATTGTAATTCCAGTTGTATTCGTAGCTTCTGCCATAATTTTTATTTCAATAATTTAT
AAAAAATCAACAACAGTTAAAATTGGTTTAAAAAAATTTAAATCAATAAAATTAAATTCA
ATGAAAGGTTAAGCACAATAAATAAAGTTAAAAAAAAAAAAAAAAAAATTGAAATTATTA
ATTTGTTTCTTTTTTTTTTATAAATCAACCAAAAAAAAAAAAAAAAAAAAAA

---nfinggtrsk*k*l***ryrygry**ssifki*fy*nfkr**nifw*ifk*iiir**
RTFFSTENIKDLESNSITTLLKLPHFNNECIIDPDFSVLLSTDFKENCKEDNRKWVIPVS
IVIPVVFVASAIIFISIIYKKSTTVKIGLKKFKSIKLNSMKG*aq*iklkkkkkklklli
cffffykstkkkkkkk

Frame A:
---*fhqwrnkikiemivivkisiwkilivqhlqnlvllkfqkiikyflvdf*inyyqii
enlffn*ky*rfgikfnynfikittf***myy*s*ffciiin*fqrkl*rg**kmgntgf
ncnsscirsfchnfyfnnl*kinns*nwfkki*inkikfnerlstinkvkkkkkkieiin
lflffl*inqkkkkkk


Frame B:
---nfinggtrsk*k*l***ryrygry**ssifki*fy*nfkr**nifw*ifk*iiir**
RTFFSTENIKDLESNSITTLLKLPHFNNECIIDPDFSVLLSTDFKENCKEDNRKWVIPVS
IVIPVVFVASAIIFISIIYKKSTTVKIGLKKFKSIKLNSMKG*aq*iklkkkkkklklli
cffffykstkkkkkkk


Frame C:
---issmeeqdqnrndcnskdidmedinspasskfsfikiskdnkifsgrflnkllsdnr
epffqlkilkiwnqiqlqly*nyhilimnvlliliflyyyqliskkivkriieng*yrfq
l*fqlys*llp*flfq*fiknqqqlklv*knlnq*n*iq*kvkhnk*s*kkkkkn*ny*f
vsfffinqpkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD703 (SSD703Q) /CSM/SS/SSD7-A/SSD703Q.Seq.d/                        763   0.0
VHK830 (VHK830Q) /CSM/VH/VHK8-B/VHK830Q.Seq.d/                        726   0.0
SSH307 (SSH307Q) /CSM/SS/SSH3-A/SSH307Q.Seq.d/                        726   0.0
CHP833 (CHP833Q) /CSM/CH/CHP8-B/CHP833Q.Seq.d/                        726   0.0
AHB726 (AHB726Q) /CSM/AH/AHB7-B/AHB726Q.Seq.d/                        575   e-163
VHB220 (VHB220Q) /CSM/VH/VHB2-A/VHB220Q.Seq.d/                         56   6e-07
SHH287 (SHH287Q) /CSM/SH/SHH2-D/SHH287Q.Seq.d/                         56   6e-07
CHM677 (CHM677Q) /CSM/CH/CHM6-D/CHM677Q.Seq.d/                         56   6e-07
VHM478 (VHM478Q) /CSM/VH/VHM4-D/VHM478Q.Seq.d/                         48   2e-04
SHG715 (SHG715Q) /CSM/SH/SHG7-A/SHG715Q.Seq.d/                         48   2e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   2e-14  19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-11  17
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    36   5e-11  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-10  19
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   3e-10  17
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40   5e-10  18
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    38   4e-09  14
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    40   7e-09  16
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   8e-09  15
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    42   9e-09  18

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    74   2e-12
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    59   7e-11
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    57   7e-11
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    49   6e-09
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    53   1e-08
AC117075_65(AC117075|pid:none) Dictyostelium discoideum chromoso...    50   2e-08
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    60   6e-08
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    57   5e-07
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    44   7e-07
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    54   3e-06

 psg: 0.72  gvh: 0.29  alm: 0.15  top: 0.93  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.12  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSD703 is cyt

>SSD703Z.Seq
----------TTAATTTCATCAATGGAGGAACAAGATCAAAATAGAAATGATTGTAATAG
TAAAGATATCGATATGGAAGATATTAATAGTCCAGCATCTTCAAAATTTAGTTTTATTAA
AATTTCAAAAGATAATAAAATATTTTCTGGTAGATTTTTAAATAAATTATTATCAGATAA
TAGAGAACCTTTTTTTCAACTGAAAATATTAAAGATTTGGAATCAAATTCAATTACAACT
TTATTAAAATTACCACATTTTAATAATGAATGTATTATTGATCCTGATTTTTCTGTATTA
TTATCAACTGATTTCAAAGAAAATTGTAAAGAGGATAATAGAAAATGGGTAATACCGGTT
TCAATTGTAATTCCAGTTGTATTCGTAGCTTCTGCCATAATTTTTATTTCAATAATTTAT
AAAAAATCAACAACAGTTAAAATTGGTTTAAAAAAATTTAAATCAATAAAATTAAATTCA
ATGAAAGGTTAAGCACAATAAATAAAGTTAAAAAAAAAAAAAAAAAAATTGAAATTATTA
ATTTGTTTCTTTTTTTTTTATAAATCAACCAAAAAAAAAAAAAAAAAAAAAA