SSD683
Library SS
(Link to library)
Clone ID SSD683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13413-1
Original site URL
Representative seq. ID SSD683Z
(Link to Original site)
Representative DNA sequence
>SSD683 (SSD683Q) /CSM/SS/SSD6-D/SSD683Q.Seq.d/
XXXXXXXXXXTCAAGATATTCAAAATTTTATCCAAGATTATGACTTAAATAAGGATTACA
GTGTAACTTCATCTGAAATATATCANTCATTTTTAAAAAAAATGAATGGTGATAGTTTAA
AGGCATCACAGGCAGCTGGTGTTTTATGTTCAACAGTTGATATGGACAATGATGGTAAAT
TCAGTTATTATGAAATTTCTAAATATTGTGCAGACCAGGCAAAAAAACAAATTGAACAAA
ATGCTGAGACTGCTGCATTGGCTGATGTCGAAGCATTGTTATTAAGACTTGATAAAGATA
AGGATAAAAAATTAAACAAAACAGAATTTGTTAAATTCTTTAAAGAACAGGGCTATAATC
CATACTCTGACCCTGATTATGTTCTTAAAATTATTGATTTGGATAAAGATGGATATGTTT
CCGCAAGTGAATTACAAGAATGGTTCAAACAAAAAAGATTGGCTTATGCAAGAGGTCCAA
TTTGTTAAATTCTCTTGGGACAAAATACCACATTAATCTTATTTTTTAAGGTTTTTAAAT
TTGGTACAAAAAAATAAAAATTAAATAAATATTCAATTTCCATTGTCCAAAATCCAAAAA
AAAA
sequence update 1997.12.10
Translated Amino Acid sequence
---QDIQNFIQDYDLNKDYSVTSSEIYXSFLKKMNGDSLKASQAAGVLCSTVDMDNDGKF
SYYEISKYCADQAKKQIEQNAETAALADVEALLLRLDKDKDKKLNKTEFVKFFKEQGYNP
YSDPDYVLKIIDLDKDGYVSASELQEWFKQKRLAYARGPIC*illgqnttlilffkvfkf
gtkk*klnkysisivqnpkk


Translated Amino Acid sequence (All Frames)
Frame A:
---QDIQNFIQDYDLNKDYSVTSSEIYXSFLKKMNGDSLKASQAAGVLCSTVDMDNDGKF
SYYEISKYCADQAKKQIEQNAETAALADVEALLLRLDKDKDKKLNKTEFVKFFKEQGYNP
YSDPDYVLKIIDLDKDGYVSASELQEWFKQKRLAYARGPIC*illgqnttlilffkvfkf
gtkk*klnkysisivqnpkk


Frame B:
---kifkilskimt*iritv*lhlkyixhf*kk*mviv*rhhrqlvfyvqqliwtmmvns
vimkflnivqtrqknklnkmlrllhwlmskhcy*dlikirikn*tkqnllnslknraiih
tltlimflklliwikmdmfpqvnykngsnkkdwlmqevqfvkfswdkiph*syflrflnl
vqknkn*iniqfplskiqkk


Frame C:
---ryskfyprl*lk*glqcnfi*nisxifkknew**fkgitgswcfmfns*ygq*w*iq
ll*nf*ilcrpgkktn*tkc*dccig*crsivikt**r*g*kikqnric*il*rtgl*si
l*p*lcs*ny*fg*rwicfrk*itrmvqtkkiglckrsnllnslgtkyhinlif*gf*iw
ykkikik*ifnfhcpkskkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM536 (SSM536Q) /CSM/SS/SSM5-B/SSM536Q.Seq.d/ 967 0.0
SSM254 (SSM254Q) /CSM/SS/SSM2-C/SSM254Q.Seq.d/ 967 0.0
SSK215 (SSK215Q) /CSM/SS/SSK2-A/SSK215Q.Seq.d/ 967 0.0
SSI258 (SSI258Q) /CSM/SS/SSI2-C/SSI258Q.Seq.d/ 967 0.0
SSF123 (SSF123Q) /CSM/SS/SSF1-A/SSF123Q.Seq.d/ 967 0.0
SSD683 (SSD683Q) /CSM/SS/SSD6-D/SSD683Q.Seq.d/ 967 0.0
SSJ723 (SSJ723Q) /CSM/SS/SSJ7-A/SSJ723Q.Seq.d/ 959 0.0
SSE532 (SSE532Q) /CSM/SS/SSE5-B/SSE532Q.Seq.d/ 959 0.0
SSH174 (SSH174Q) /CSM/SS/SSH1-D/SSH174Q.Seq.d/ 954 0.0
SSM207 (SSM207Q) /CSM/SS/SSM2-A/SSM207Q.Seq.d/ 948 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB070449|AB070449.1 Dictyostelium discoideum cbpG mRNA for calcium binding protein CBP7, complete cds, clone:SSM207. 632 0.0 3
AB070448|AB070448.1 Dictyostelium discoideum cbpF mRNA for calcium binding protein CBP6, complete cds, clone:SSA631. 252 e-142 4
AF076972|AF076972.1 Dictyostelium discoideum calcium-binding protein mRNA, complete cds. 163 e-111 4
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2. 36 0.001 13
AX344565|AX344565.1 Sequence 16 from Patent WO0200932. 32 0.003 13
AP003193|AP003193.2 Clostridium perfringens DNA, complete genome, section 9/10. 34 0.004 12
AL117340|AL117340.3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains STSs, GSSs and CpG Islands. 38 0.005 7
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 30 0.007 11
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 0.013 10
AQ966783|AQ966783.1 LERIM16TRB LERG Arabidopsis thaliana genomic clone LERIM16, genomic survey sequence. 48 0.016 2
dna update 2004. 2. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=... 212 7e-54
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ... 212 7e-54
(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=... 196 3e-49
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=... 50 6e-05
(P54653) RecName: Full=Calcium-binding protein 2; &S62881(S6288... 40 0.037
CU640366_1300(CU640366|pid:none) Podospora anserina genomic DNA ... 39 0.14
AF034089_1(AF034089|pid:none) Neurospora crassa calcineurin subu... 38 0.19
EF469732_1(EF469732|pid:none) Setosphaeria turcica calcineurin B... 38 0.19
(P87072) RecName: Full=Calcineurin subunit B; AltName: Full=Prot... 38 0.19
T47245(T47245) calcineurin regulatory chain [imported] - Neurosp... 38 0.19
protein update 2009. 6.10
PSORT

psg: 0.75 gvh: 0.41 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SSD683 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD683Z
3' end seq.
>SSD683Z.Seq
----------TCAAGATATTCAAAATTTTATCCAAGATTATGACTTAAATAAGGATTACA
GTGTAACTTCATCTGAAATATATCANTCATTTTTAAAAAAAATGAATGGTGATAGTTTAA
AGGCATCACAGGCAGCTGGTGTTTTATGTTCAACAGTTGATATGGACAATGATGGTAAAT
TCAGTTATTATGAAATTTCTAAATATTGTGCAGACCAGGCAAAAAAACAAATTGAACAAA
ATGCTGAGACTGCTGCATTGGCTGATGTCGAAGCATTGTTATTAAGACTTGATAAAGATA
AGGATAAAAAATTAAACAAAACAGAATTTGTTAAATTCTTTAAAGAACAGGGCTATAATC
CATACTCTGACCCTGATTATGTTCTTAAAATTATTGATTTGGATAAAGATGGATATGTTT
CCGCAAGTGAATTACAAGAATGGTTCAAACAAAAAAGATTGGCTTATGCAAGAGGTCCAA
TTTGTTAAATTCTCTTGGGACAAAATACCACATTAATCTTATTTTTTAAGGTTTTTAAAT
TTGGTACAAAAAAATAAAAATTAAATAAATATTCAATTTCCATTGTCCAAAATCCAAAAA
AAAA
Length of 3' end seq. 594
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -