AFL127
Library AF
(Link to library)
Clone ID AFL127
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID AFL127Z
(Link to Original site)
Representative DNA sequence
>AFL127 (AFL127Q) /CSM/AF/AFL1-B/AFL127Q.Seq.d/
XXXXXXXXXXTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCT
TCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCAT
TTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTA
CCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTC
CATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAA
AAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTG
ATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATC
CAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATA
ACGCTGCCATNAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAA
GATTCTTCTGCTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---DSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGT
TFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSD
IEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAXNSNYHHLKLMIMXI*kr
ffc*


Translated Amino Acid sequence (All Frames)
Frame A:
---DSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGT
TFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSD
IEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAXNSNYHHLKLMIMXI*kr
ffc*


Frame B:
---iqlpiklvtismkkkpshsipspngskmslvvkflhllnlnqnqnqmmlqlrlplvp
lskswf*thqrmfwlnstlhgaviarillqstin*vnt*ktlnlsqs*rlmptqmmyqvi
sklevtqpscssklmtkkiqslmkvkemii*tllnsfkitlpxiqitiisn***cxskkd
ssa


Frame C:
---fscq*sslqfr*krnlliryrlqmdprchww*sfsic*istrtrik*css*gcrwyh
fqkvgfrltkgcfg*ilrsmvrslqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*y
rn*rlpnhhalqs**qrksnll*rskk*syelc*ihsr*rchxfklpssqtddnvnlkki
lll


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFO713 (AFO713Q) /CSM/AF/AFO7-A/AFO713Q.Seq.d/ 1066 0.0
AFO433 (AFO433Q) /CSM/AF/AFO4-B/AFO433Q.Seq.d/ 1066 0.0
AFM548 (AFM548Q) /CSM/AF/AFM5-B/AFM548Q.Seq.d/ 1066 0.0
AFM212 (AFM212Q) /CSM/AF/AFM2-A/AFM212Q.Seq.d/ 1066 0.0
AFL127 (AFL127Q) /CSM/AF/AFL1-B/AFL127Q.Seq.d/ 1066 0.0
AFK539 (AFK539Q) /CSM/AF/AFK5-B/AFK539Q.Seq.d/ 1066 0.0
AFK269 (AFK269Q) /CSM/AF/AFK2-C/AFK269Q.Seq.d/ 1066 0.0
AFK217 (AFK217Q) /CSM/AF/AFK2-A/AFK217Q.Seq.d/ 1066 0.0
AFJ864 (AFJ864Q) /CSM/AF/AFJ8-C/AFJ864Q.Seq.d/ 1066 0.0
AFJ720 (AFJ720Q) /CSM/AF/AFJ7-A/AFJ720Q.Seq.d/ 1066 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read. 599 e-167 1
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 78 2e-10 1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence. 74 3e-09 1
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence. 70 4e-08 1
CK030146|CK030146.1 AGENCOURT_16621384 NIH_ZGC_7 Danio rerio cDNA clone IMAGE:7052631 5', mRNA sequence. 70 4e-08 1
AL924030|AL924030.1 Danio rerio EST sequence, clone 134-B07-2. 70 4e-08 1
BC067155|BC067155.1 Danio rerio zgc:77086, mRNA (cDNA clone MGC:77086 IMAGE:6960343), complete cds. 70 4e-08 1
dna update 2004. 8. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G... 165 8e-40
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-... 158 8e-38
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul... 154 2e-36
(Q12730) RecName: Full=Protein disulfide-isomerase; Sho... 151 1e-35
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos... 151 1e-35
(Q00248) RecName: Full=Protein disulfide-isomerase; Sho... 150 2e-35
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ... 148 8e-35
BC097044_1(BC097044|pid:none) Danio rerio protein disulfide isom... 147 1e-34
BC045862_1(BC045862|pid:none) Danio rerio protein disulfide isom... 147 1e-34
BC063979_1(BC063979|pid:none) Danio rerio protein disulfide isom... 147 1e-34
protein update 2009. 4.25
PSORT

psg: 0.39 gvh: 0.38 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for AFL127 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFL127Z
3' end seq.
>AFL127Z.Seq
----------TGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCT
TCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCAT
TTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTA
CCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTC
CATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAA
AAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTG
ATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATC
CAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATA
ACGCTGCCATNAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAA
GATTCTTCTGCTAA
Length of 3' end seq. 544
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -