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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD559
Library SS
(Link to library)
Clone ID SSD559
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13431-1
Original site URL
Representative seq. ID SSD559E
(Link to Original site)
Representative DNA sequence 
>SSD559 (SSD559Q) /CSM/SS/SSD5-C/SSD559Q.Seq.d/
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTGNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
CAAACTTTGTACATATCGAAGAAAATAATAATAATAATAATAACTTTACCAATTCAATTT
TTTGTTGTAAATATTTCATAAAACAAAAACAAAAAGACAAAAAAAAAAAAATAATAATAA
TCATAATAATTAAGCAAGAGGTATAAGTAAATTCTTGTATTTCTTGAAAAATGTGCATTT
TTTTTATTGTAAATAATTAATATCAAACAATACATCCAATGATAGGGGATTTATAATTTC
TATCGCTTGTAAATAATTTTTTAAAAATAAAAAATAAAAAAAAAAATAAAAAAA
sequence update 1999. 6.18
Translated Amino Acid sequence 
ltfffn*ifknk*iky*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITE
PKSNMSSPSLNSSTSSLSSPSLNSSPSLSSSTDGAFIMRTTSSPSIDIPNRESSYFRMLQ
VVEAXXXXKKKKKKKKKKKSNFVHIEENNNNNNNFTNSIFCCKYFIKQKQKDKKKKIIII
IIIKQEV*vnscis*kmciffivnn*yqtihpmigdl*flslvnnflkiknkkknkk
Translated Amino Acid sequence (All Frames) 
Frame A:
l*hfflikfsktnk*nintksskklsnniknkk*tlsltfsnhhqkipklvyqvqwtq*l
nqnqiclhhl*ihphqvylhhl*ihlhh*ahqlmvls**eqhllhqlifqienpltlecs
kllklxxxkkkkkkkkkkknqtlyiskkiiiiiitlpiqffvvnis*nknkktkkkk***
s**lskryk*ilvflekcaffll*iinikqyiq**giynfyrl*iif*k*kikkkikk


Frame B:
sniff*lnfqkqinkiliqkvvknfqttskiknelfl*pfqitikkyqnwfikfnglnn*
tkikyvftifkfihikfiftifkfisiiklin*wcfhnennifsin*ysk*rilll*nap
sc*sxxxxkkkkkkkkkkkiklctyrrk******lyqfnfll*ifhktktkrqkkknnnn
hnn*argiskflyflknvhffyck*lisnntsndrgfiisiack*ffknkk*kkk*k


Frame C:
ltfffn*ifknk*iky*ykk**ktfkqhqk*KMNSFFDLFKSPSKNTKTGLSSSMDSITE
PKSNMSSPSLNSSTSSLSSPSLNSSPSLSSSTDGAFIMRTTSSPSIDIPNRESSYFRMLQ
VVEAXXXXKKKKKKKKKKKSNFVHIEENNNNNNNFTNSIFCCKYFIKQKQKDKKKKIIII
IIIKQEV*vnscis*kmciffivnn*yqtihpmigdl*flslvnnflkiknkkknkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK403 (VSK403Q) /CSM/VS/VSK4-A/VSK403Q.Seq.d/                        547   e-155
VSH642 (VSH642Q) /CSM/VS/VSH6-B/VSH642Q.Seq.d/                        547   e-155
VSH314 (VSH314Q) /CSM/VS/VSH3-A/VSH314Q.Seq.d/                        547   e-155
VSD264 (VSD264Q) /CSM/VS/VSD2-C/VSD264Q.Seq.d/                        547   e-155
SSL245 (SSL245Q) /CSM/SS/SSL2-B/SSL245Q.Seq.d/                        547   e-155
SSK341 (SSK341Q) /CSM/SS/SSK3-B/SSK341Q.Seq.d/                        547   e-155
SSD559 (SSD559Q) /CSM/SS/SSD5-C/SSD559Q.Seq.d/                        547   e-155
SSC584 (SSC584Q) /CSM/SS/SSC5-D/SSC584Q.Seq.d/                        547   e-155
SSA325 (SSA325Q) /CSM/SS/SSA3-B/SSA325Q.Seq.d/                        547   e-155
SSK549 (SSK549Q) /CSM/SS/SSK5-C/SSK549Q.Seq.d/                        523   e-147
own update 2001. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX004815|BX004815.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-31O18.    40  0.015  4
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  0.14  4
AZ549014|AZ549014.1 ENTFR48TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.20  2
BX284620|BX284620.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-218E20.    42  0.22  5
AC096770|AC096770.3 Homo sapiens chromosome 2 clone RP11-755P13, complete sequence.    42  0.23  4
AL732544|AL732544.12 Zebrafish DNA sequence from clone BUSM1-6I1 in linkage group 7.    36  0.28  6
AL691521|AL691521.7 Zebrafish DNA sequence from clone BUSM1-186K12 in linkage group 7.    36  0.57  4
AB010068|AB010068.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18P6.    46  0.59  1
BH911620|BH911620.1 SALK_069783.53.50.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_069783.53.50.x, DNA sequence.    46  0.59  1
AL021567|AL021567.1 Caenorhabditis elegans cosmid F21A10.         46  0.61  2
dna update 2003. 7.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    40   0.093
AL844506_47(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    37   0.60
A54138(A54138) acidic repetitive protein arp1 - Tetrahymena ther...    35   1.7
AB276041_1(AB276041|pid:none) Halocynthia roretzi mRNA for HrUra...    34   5.1
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt...    33   6.6
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    33   6.6
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.6
CP001026_1415(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    33   6.7
AY395259_1(AY395259|pid:none) Hyalomma anatolicum excavatum calr...    33   8.7
AE017355_4236(AE017355|pid:none) Bacillus thuringiensis serovar ...    33   8.7
protein update 2009. 7. 6
PSORT 

 psg: 0.56  gvh: 0.52  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SSD559 is nuc
5' end seq. ID SSD559F
5' end seq. 
>SSD559F.Seq
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------
---
Length of 5' end seq. 413
3' end seq. ID SSD559Z
3' end seq. 
>SSD559Z.Seq
----------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAAC
TTTGTACATATCGAAGAAAATAATAATAATAATAATAACTTTACCAATTCAATTTTTTGT
TGTAAATATTTCATAAAACAAAAACAAAAAGACAAAAAAAAAAAAATAATAATAATCATA
ATAATTAAGCAAGAGGTATAAGTAAATTCTTGTATTTCTTGAAAAATGTGCATTTTTTTT
ATTGTAAATAATTAATATCAAACAATACATCCAATGATAGGGGATTTATAATTTCTATCG
CTTGTAAATAATTTTTTAAAAATAAAAAATAAAAAAAAAAATAAAAAAA
Length of 3' end seq. 339
Connected seq. ID SSD559P
Connected seq. 
>SSD559P.Seq
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTGGTTCATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------
---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCAAACTTTGTAC
ATATCGAAGAAAATAATAATAATAATAATAACTTTACCAATTCAATTTTTTGTTGTAAAT
ATTTCATAAAACAAAAACAAAAAGACAAAAAAAAAAAAATAATAATAATCATAATAATTA
AGCAAGAGGTATAAGTAAATTCTTGTATTTCTTGAAAAATGTGCATTTTTTTTATTGTAA
ATAATTAATATCAAACAATACATCCAATGATAGGGGATTTATAATTTCTATCGCTTGTAA
ATAATTTTTTAAAAATAAAAAATAAAAAAAAAAATAAAAAAA
Length of connected seq. 752
Full length Seq ID SSD559E
Full length Seq. 
>SSD559E.Seq
CTCTAACATTTTTTTTTAATTAAATTTTCAAAAACAAATAAATAAAATATTAATACAAAA
AGTAGTAAAAAACTTTCAAACAACATCAAAAATAAAAAATGAACTCTTTCTTTGACCTTT
TCAAATCACCATCAAAAAATACCAAAACTGGTTTATCAAGTTCAATGGACTCAATAACTG
AACCAAAATCAAATATGTCTTCACCATCTTTAAATTCATCCACATCAAGTTTATCTTCAC
CATCTTTAAATTCATCTCCATCATTAAGCTCATCAACTGATGGTGCTTTCATAATGAGAA
CAACATCTTCTCCATCAATTGATATTCCAAATAGAGAATCCTCTTACTTTAGAATGCTCC
AAGTTGTTGAAGCTGNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
CAAACTTTGTACATATCGAAGAAAATAATAATAATAATAATAACTTTACCAATTCAATTT
TTTGTTGTAAATATTTCATAAAACAAAAACAAAAAGACAAAAAAAAAAAAATAATAATAA
TCATAATAATTAAGCAAGAGGTATAAGTAAATTCTTGTATTTCTTGAAAAATGTGCATTT
TTTTTATTGTAAATAATTAATATCAAACAATACATCCAATGATAGGGGATTTATAATTTC
TATCGCTTGTAAATAATTTTTTAAAAATAAAAAATAAAAAAAAAAATAAAAAAA
Length of full length seq. 714