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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD544
Library SS
(Link to library)
Clone ID SSD544
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13979-1
Original site URL
Representative seq. ID SSD544Z
(Link to Original site)
Representative DNA sequence 
>SSD544 (SSD544Q) /CSM/SS/SSD5-B/SSD544Q.Seq.d/
XXXXXXXXXXGAGTGTCAATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAAT
CAAGACTTTGGTACCATCCTCTAATGAAGTTCAAATGTGGGATATCGTTTCTTTAATTCA
AGAGAAAGTAATTGAAAAAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAAC
CGATTTACGTGAAGTTTTAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTT
TGGTGTGGGTCTTCCAGTNATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAA
TGATATGGTCACTCCAAATGGTGATGATATTTTACCACCAACTTCNGACATTAAAACCTA
TTATTTTGAAAAATTAATTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAA
TTATTTAATTTTTTTTAAATAAAATAAAATAAAAAAACAAATAAAATAAACAAAAAAAAA
AAAA
sequence update 1997.10.13
Translated Amino Acid sequence 
---CQLVCSIMLTSLLIQIKTLVPSSNEVQMWDIVSLIQEKVIEKVVTDKTITPFDLETD
LREVLVDDEVVSKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYY
FEKLIGKSESSKPLIIN*nyliffk*nkikkqik*tkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---svnwfvqlcllhy*sksrlwyhplmkfkcgisfl*fkrk*lkklslikpllhltskp
iyvkf*smmk*fpkftt*slvwvfqxsnqls**lammtimiwslqmvmifyhqlxtlkpi
ilkn*lvnqnlqnh*l*ikii*fflnkik*knk*nkqkkk


Frame B:
---vsiglfnyayfiinpnqdfgtil**ssnvgyrffnsresn*ksch**nhysi*prnr
ft*sfsr**ssfqssqlnlwcgsssxqis*answr**q**yghskw**yfttnfxh*nll
f*kinw*irifktinyklklfnff*ik*nkktnkinkkkk


Frame C:
---CQLVCSIMLTSLLIQIKTLVPSSNEVQMWDIVSLIQEKVIEKVVTDKTITPFDLETD
LREVLVDDEVVSKVHNLIFGVGLPVIKSVELIAGDDDNNDMVTPNGDDILPPTSDIKTYY
FEKLIGKSESSKPLIIN*nyliffk*nkikkqik*tkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD544 (SSD544Q) /CSM/SS/SSD5-B/SSD544Q.Seq.d/                        817   0.0
SSM439 (SSM439Q) /CSM/SS/SSM4-B/SSM439Q.Seq.d/                        801   0.0
SSM121 (SSM121Q) /CSM/SS/SSM1-A/SSM121Q.Seq.d/                        801   0.0
SSJ417 (SSJ417Q) /CSM/SS/SSJ4-A/SSJ417Q.Seq.d/                        801   0.0
SSG432 (SSG432Q) /CSM/SS/SSG4-B/SSG432Q.Seq.d/                        801   0.0
SSG167 (SSG167Q) /CSM/SS/SSG1-C/SSG167Q.Seq.d/                        801   0.0
SLF452 (SLF452Q) /CSM/SL/SLF4-C/SLF452Q.Seq.d/                        801   0.0
SLC307 (SLC307Q) /CSM/SL/SLC3-A/SLC307Q.Seq.d/                        801   0.0
SLB601 (SLB601Q) /CSM/SL/SLB6-A/SLB601Q.Seq.d/                        801   0.0
SSE466 (SSE466Q) /CSM/SS/SSE4-C/SSE466Q.Seq.d/                        795   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037369) Dictyostelium discoideum slug cDNA, clone SSD544.      696   0.0    1
(AU052987) Dictyostelium discoideum slug cDNA, clone SLF452.      680   0.0    1
(AU039141) Dictyostelium discoideum slug cDNA, clone SSM439.      680   0.0    1
(AU038903) Dictyostelium discoideum slug cDNA, clone SSM121.      680   0.0    1
(AU034237) Dictyostelium discoideum slug cDNA, clone SLC307.      680   0.0    1
(AU033908) Dictyostelium discoideum slug cDNA, clone SLB601.      680   0.0    1
(C94120) Dictyostelium discoideum slug cDNA, clone SSG432.        680   0.0    1
(C92722) Dictyostelium discoideum slug cDNA, clone SSF130.        680   0.0    1
(C91047) Dictyostelium discoideum slug cDNA, clone SSJ417.        680   0.0    1
(C89706) Dictyostelium discoideum slug cDNA, clone SSG167.        680   0.0    1
dna update 2009. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR380947_77(CR380947|pid:none) Candida glabrata strain CBS138 ch...    32   7.5
protein update 2009. 1.28
PSORT 

 psg: 0.96  gvh: 0.63  alm: 0.31  top: 0.40  tms: 0.13  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: vesicles of secretory system

>> prediction for SSD544 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD544Z
3' end seq. 
>SSD544Z.Seq
----------GAGTGTCAATTGGTTTGTTCAATTATGCTTACTTCATTATTAATCCAAAT
CAAGACTTTGGTACCATCCTCTAATGAAGTTCAAATGTGGGATATCGTTTCTTTAATTCA
AGAGAAAGTAATTGAAAAAGTTGTCACTGATAAAACCATTACTCCATTTGACCTCGAAAC
CGATTTACGTGAAGTTTTAGTCGATGATGAAGTAGTTTCCAAAGTTCACAACTTAATCTT
TGGTGTGGGTCTTCCAGTNATCAAATCAGTTGAGCTAATAGCTGGCGATGATGACAATAA
TGATATGGTCACTCCAAATGGTGATGATATTTTACCACCAACTTCNGACATTAAAACCTA
TTATTTTGAAAAATTAATTGGTAAATCAGAATCTTCAAAACCATTAATTATAAATTAAAA
TTATTTAATTTTTTTTAAATAAAATAAAATAAAAAAACAAATAAAATAAACAAAAAAAAA
AAAA
Length of 3' end seq. 474
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -