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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD539
Library SS
(Link to library)
Clone ID SSD539
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SSD539E
(Link to Original site)
Representative DNA sequence 
>SSD539 (SSD539Q) /CSM/SS/SSD5-B/SSD539Q.Seq.d/
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACTAATC
AATTAAAAAAAAAA
sequence update 1997.10.13
Translated Amino Acid sequence 
KKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQ
HEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn*sikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkys
t*ttnprttr*iksrkkstiirtrtkskii*sfflfkklin*kk


Frame B:
KKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQ
HEQQIQEQQDKLNQEKNQQLLEQEQNQK*fnhsfflkn*sikkk


Frame C:
rnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifn
mnnksknnkin*ikkkinny*nknkiknnliilsf*ktnqlkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD539 (SSD539Q) /CSM/SS/SSD5-B/SSD539Q.Seq.d/                        561   e-159
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        561   e-159
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        561   e-159
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        561   e-159
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        561   e-159
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        561   e-159
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        561   e-159
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        561   e-159
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        561   e-159
SHA671 (SHA671Q) /CSM/SH/SHA6-C/SHA671Q.Seq.d/                        561   e-159
own update 2003. 6.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(U25143) Dictyostelium discoideum cAMP-inducible prespore pr...   444   e-128  2
(BJ355918) Dictyostelium discoideum cDNA clone:dda58k17, 3' ...   444   e-128  2
(BJ385458) Dictyostelium discoideum cDNA clone:ddc55d04, 3' ...   444   e-128  2
(BJ354904) Dictyostelium discoideum cDNA clone:dda55j05, 3' ...   444   e-128  2
(BJ403095) Dictyostelium discoideum cDNA clone:dds24d04, 3' ...   444   e-128  2
(BJ380422) Dictyostelium discoideum cDNA clone:ddc38i01, 3' ...   444   e-128  2
(BJ403098) Dictyostelium discoideum cDNA clone:dds24e04, 3' ...   444   e-128  2
(BJ382288) Dictyostelium discoideum cDNA clone:ddc44c07, 3' ...   444   e-128  2
(BJ354475) Dictyostelium discoideum cDNA clone:dda53a24, 3' ...   444   e-128  2
(BJ408928) Dictyostelium discoideum cDNA clone:dds47m12, 3' ...   444   e-128  2
dna update 2009. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   115   4e-25
(B7NU04) RecName: Full=Electron transport complex protein rnfC; ...    36   0.48
AE014186_35(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    35   1.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.1
AM910993_346(AM910993|pid:none) Plasmodium knowlesi strain H chr...    35   1.1
(P58324) RecName: Full=Electron transport complex protein rnfC; ...    34   1.4
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    34   1.4
(Q320Y6) RecName: Full=Electron transport complex protein rnfC; ...    34   1.4
(B6IB67) RecName: Full=Electron transport complex protein rnfC; ...    34   1.4
B90921(B90921) probable membrane protein [imported] - Escherichi...    34   1.4
protein update 2009. 7. 6
PSORT 

 psg: 0.67  gvh: 0.21  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSD539 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD539E
Full length Seq. 
>SSD539E.Seq
AAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGC
TCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAA
TTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCA
ACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATT
ATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTTAAAAAACTAATC
AATTAAAAAAAAAA
Length of full length seq. 314