>SSD525 (SSD525Q) /CSM/SS/SSD5-B/SSD525Q.Seq.d/
XXXXXXXXXXTGGTGGGTGGTATCAAACCAAATGCAAACTAAACCTAAATGAAATCTTTC
ACTGATTAAGGTGCTGGTTAAACGGTCGGTCTCTGTGGTCTTGCGGCTGGTATGGCAATG
GGTATNGTTGGTGACTCTGGTGTAAGAGCTTTCGGTCAACAACCAAAATTATACGTAATT
ATGATGCTNATCCTAATTTTCTCTGAAGCTCTTGGTTAATATGGTTAAATAATTGGTATT
TAATAATAATCTGTCTCAGATACCTATNGCCCAGGTCAAGCTTTAGTTCCATTAAACAGT
GGAAACGTNATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAAAT
AAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAA

---vggikpnan*t*mksftd*gag*TVGLCGLAAGMAMGXVGDSGVRAFGQQPKLYVIM
MLILIFSEALG*yg*iigi***svsdtyxpgqalvplnsgnvigkn*ial*knnk*y*nk
*ikinkkkisk*

Frame A:
---ggwyqtkcklnlneifh*lrcwlngrslwscgwygngyxw*lwcksfrsttkiirny
daxpnfl*sswliwlnnwyliiiclrylxprssfssikqwkrxw*klnsfikkq*iilk*
inknkqkknf*i


Frame B:
---vggikpnan*t*mksftd*gag*TVGLCGLAAGMAMGXVGDSGVRAFGQQPKLYVIM
MLILIFSEALG*yg*iigi***svsdtyxpgqalvplnsgnvigkn*ial*knnk*y*nk
*ikinkkkisk*


Frame C:
---wvvsnqmqtkpk*nlslikvlvkrsvsvvlrlvwqwvxlvtlv*elsvnnqnyt*l*
cxs*fslkllvnmvk*lvfnnnlsqipxaqvkl*fh*tvetxlvktk*lykktinnikin
k*k*tkkkflnk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD525 (SSD525Q) /CSM/SS/SSD5-B/SSD525Q.Seq.d/                        615   e-175
VSB705 (VSB705Q) /CSM/VS/VSB7-A/VSB705Q.Seq.d/                        454   e-127
SSM619 (SSM619Q) /CSM/SS/SSM6-A/SSM619Q.Seq.d/                        454   e-127
SSL119 (SSL119Q) /CSM/SS/SSL1-A/SSL119Q.Seq.d/                        454   e-127
SSK860 (SSK860Q) /CSM/SS/SSK8-C/SSK860Q.Seq.d/                        454   e-127
SSK830 (SSK830Q) /CSM/SS/SSK8-B/SSK830Q.Seq.d/                        454   e-127
SSK788 (SSK788Q) /CSM/SS/SSK7-D/SSK788Q.Seq.d/                        454   e-127
SSK647 (SSK647Q) /CSM/SS/SSK6-B/SSK647Q.Seq.d/                        454   e-127
SSK253 (SSK253Q) /CSM/SS/SSK2-C/SSK253Q.Seq.d/                        454   e-127
SSJ703 (SSJ703Q) /CSM/SS/SSJ7-A/SSJ703Q.Seq.d/                        454   e-127

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.   454   e-124  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   454   e-124  1
CF081691|CF081691.1 QHL14B02.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL14B02, mRNA sequence.    38   9e-05  2
CB821369|CB821369.1 EST 2220 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be002d22 3', mRNA sequence.    52   0.006  1
BQ641147|BQ641147.1 EST307 almond cDNA library Prunus dulcis cDNA 5' similar to V-type H+-ATPase 16 kDa subunit, mRNA sequence.    52   0.006  1
CB822417|CB822417.1 EST 3268 Half-Ripe Apricot Fruit Lambda Zap II Library Prunus armeniaca cDNA clone be006b23 3', mRNA sequence.    52   0.006  1
CA853985|CA853985.1 EST420 almond cDNA library Prunus dulcis cDNA 5', mRNA sequence.    52   0.006  1
AL035679|AL035679.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA  project).    40   0.057  2
U01057|U01057.1 Entamoeba histolytica HM-1:IMSS V-type ATPase proteolipid (EhVMA3) gene, complete cds.    36   0.10   2
AL161594|AL161594.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90.    40   0.10   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...   134   7e-31
AP003263_18(AP003263|pid:none) Oryza sativa Japonica Group genom...    52   8e-06
AB028204_1(AB028204|pid:none) Porphyra yezoensis mRNA for vacuol...    52   8e-06
AY826922_1(AY826922|pid:none) Heterocapsa triquetra clone HTVATP...    51   1e-05
(Q43362) RecName: Full=V-type proton ATPase 16 kDa proteolipid s...    50   3e-05
U53182_1(U53182|pid:none) Pleurochrysis carterae V-type ATPase 1...    50   3e-05
EF145656_1(EF145656|pid:none) Populus trichocarpa clone WS0112_F...    50   3e-05
AY261522_1(AY261522|pid:none) Suaeda maritima subsp. salsa vacuo...    49   4e-05
AC148293_4(AC148293|pid:none) Medicago truncatula clone mth2-16c...    49   4e-05
AB003940_1(AB003940|pid:none) Acetabularia acetabulum mRNA for v...    49   4e-05

 psg: 0.92  gvh: 0.56  alm: 0.31  top: 0.40  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSD525 is end

>SSD525Z.Seq
----------TGGTGGGTGGTATCAAACCAAATGCAAACTAAACCTAAATGAAATCTTTC
ACTGATTAAGGTGCTGGTTAAACGGTCGGTCTCTGTGGTCTTGCGGCTGGTATGGCAATG
GGTATNGTTGGTGACTCTGGTGTAAGAGCTTTCGGTCAACAACCAAAATTATACGTAATT
ATGATGCTNATCCTAATTTTCTCTGAAGCTCTTGGTTAATATGGTTAAATAATTGGTATT
TAATAATAATCTGTCTCAGATACCTATNGCCCAGGTCAAGCTTTAGTTCCATTAAACAGT
GGAAACGTNATTGGTAAAAACTAAATAGCTTTATAAAAAAACAATAAATAATATTAAAAT
AAATAAATAAAAATAAACAAAAAAAAAATTTCTAAATAAA