NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD524
Library SS
(Link to library)
Clone ID SSD524
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12920-1
Original site URL
Representative seq. ID SSD524Z
(Link to Original site)
Representative DNA sequence 
>SSD524 (SSD524Q) /CSM/SS/SSD5-A/SSD524Q.Seq.d/
XXXXXXXXXXTTTCTTTCTTTTTTTAAGTATCATGCCCATTCTTTGTTTTTGAAATAATG
TTAATTCAGAATTTAAATTTTCCAAATGATGCCTATAAATATTCAATTATTTTAATACCA
ATTTATTTTGTCCAATTCCTNACAATTTGTTCTTGCTTTTTTATTAATATTGCATTTGGG
CATAGGGATCAATAATTGGGATTGGAATTTTAATCATAGGGTTATTNACAACTGTTGTTC
TTCTGCCATAATTTCAAAATTATTTTGGGAAGCTCATCCTCAAACTGTGGAAAAACTAAT
AATAAAATAAAAAAAAATAATAAAAAAAAAAAGAAAAAGATTTTTTAATAATTAAAATAA
TAAAAAAAAAAAATAATAATAAAATAATTTCTTTTCTACTTTGA
sequence update 1997.10.13
Translated Amino Acid sequence 
---lsffkyhahslflk*c*fri*ifqmmpiniqlf*YQFILSNSXQFVLAFLLILHLGI
GINNWDWNFNHRVIXNCCSSAIISKLFWEAHPQTVEKLIIK*kkiikkkrkrffnn*nnk
kkk***nnffstl
Translated Amino Acid sequence (All Frames) 
Frame A:
---fflflsimpilcf*nnvnsefkfsk*cl*ifnyfntnlfcpipxnlfllfy*yciwa
*gsiigigiliiglxttvvllp*fqnyfgklilklwkn***nkkk**kkkekdfliikii
kkknnnkiisfll*


Frame B:
---sfff*vscpffvfeimliqnlnfpndaykysiilipiyfvqflticscffiniafgh
rdq*lglef*s*gyxqllffchnfkiilgssssncgktnnkikknnkkkkkkif**lk**
kkkiiik*flfyf


Frame C:
---lsffkyhahslflk*c*fri*ifqmmpiniqlf*YQFILSNSXQFVLAFLLILHLGI
GINNWDWNFNHRVIXNCCSSAIISKLFWEAHPQTVEKLIIK*kkiikkkrkrffnn*nnk
kkk***nnffstl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD524 (SSD524Q) /CSM/SS/SSD5-A/SSD524Q.Seq.d/                        513   e-145
SSH561 (SSH561Q) /CSM/SS/SSH5-C/SSH561Q.Seq.d/                        511   e-144
SHG325 (SHG325Q) /CSM/SH/SHG3-B/SHG325Q.Seq.d/                         38   0.099
CFA111 (CFA111Q) /CSM/CF/CFA1-A/CFA111Q.Seq.d/                         38   0.099
VSJ527 (VSJ527Q) /CSM/VS/VSJ5-B/VSJ527Q.Seq.d/                         36   0.39
VSC773 (VSC773Q) /CSM/VS/VSC7-D/VSC773Q.Seq.d/                         36   0.39
VSC662 (VSC662Q) /CSM/VS/VSC6-C/VSC662Q.Seq.d/                         36   0.39
VSC388 (VSC388Q) /CSM/VS/VSC3-D/VSC388Q.Seq.d/                         36   0.39
VHG264 (VHG264Q) /CSM/VH/VHG2-C/VHG264Q.Seq.d/                         36   0.39
VHD307 (VHD307Q) /CSM/VH/VHD3-A/VHD307Q.Seq.d/                         36   0.39
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   1e-08  11
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38   2e-05  12
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    36   5e-05  11
BX571879|BX571879.8 Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18.    46   5e-05  8
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5.    32   6e-05  14
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    38   2e-04  11
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    34   2e-04  10
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    32   3e-04  10
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    32   4e-04  11
AF466146|AF466146.1 Melipona bicolor mitochondrial genome, partial sequence.    32   5e-04  7
dna update 2004. 2. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000993_190(CP000993|pid:none) Borrelia recurrentis A1, complet...    32   6.9
protein update 2009. 1.28
PSORT 

 psg: 0.99  gvh: 0.73  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.25  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for SSD524 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD524Z
3' end seq. 
>SSD524Z.Seq
----------TTTCTTTCTTTTTTTAAGTATCATGCCCATTCTTTGTTTTTGAAATAATG
TTAATTCAGAATTTAAATTTTCCAAATGATGCCTATAAATATTCAATTATTTTAATACCA
ATTTATTTTGTCCAATTCCTNACAATTTGTTCTTGCTTTTTTATTAATATTGCATTTGGG
CATAGGGATCAATAATTGGGATTGGAATTTTAATCATAGGGTTATTNACAACTGTTGTTC
TTCTGCCATAATTTCAAAATTATTTTGGGAAGCTCATCCTCAAACTGTGGAAAAACTAAT
AATAAAATAAAAAAAAATAATAAAAAAAAAAAGAAAAAGATTTTTTAATAATTAAAATAA
TAAAAAAAAAAAATAATAATAAAATAATTTCTTTTCTACTTTGA
Length of 3' end seq. 394
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -