>SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/
XXXXXXXXXXTTGAGAAAATCTCTGAAGGTGTCGTAAGCAATTCACAAGAACTTACTGTT
CTTTCAAAAGGTGGTCAACAAATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAA
GCTTAAATTGCTCTCGCTTCTTTACAAACTGCTTTCATAACATTGGATGAAGTTATTAAA
ATTACAAATAGACGTGTTAATGCAATGGAATACGTAGTTAAACCAAAACTTGAAAATACC
ATCAGTTATATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAG
AAAGTTCAAGGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAAC
TCTGCAAATAAAACAATCATGGAACCAGCCTCTGTTCATAAAGTTAGAAGTCTNATCGAT
GATGAACCAGAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATA
AAATAAAATAATAAAATAAAAATAAAAAAAAAAAAAAAAA

---ekisegvvsnsqeltvlskggqqinksreshikavea*IALASLQTAFITLDEVIKI
TNRRVNAMEYVVKPKLENTISYIITELDESEREEFYRLKKVQGKKKKDLKAKEAQKEENS
ANKTIMEPASVHKVRSLIDDEPEDAELLYED*iylkkiik*nnkikikkkkk

Frame A:
---*enl*rcrkqftrtycsfkrwstn**is*ith*scrslncsrfftncfhnig*sy*n
yk*tc*cngirs*tkt*kyhqlyyyrvg*k*krrvlqieessr*keerfeskrstkrrkl
ck*nnhgtslcs*s*ksxr**trrc*iii*rlnlfkknnkik**nknkkkkk


Frame B:
---ekisegvvsnsqeltvlskggqqinksreshikavea*IALASLQTAFITLDEVIKI
TNRRVNAMEYVVKPKLENTISYIITELDESEREEFYRLKKVQGKKKKDLKAKEAQKEENS
ANKTIMEPASVHKVRSLIDDEPEDAELLYED*iylkkiik*nnkikikkkkk


Frame C:
---rkslkvs*aihknllffqkvvnklinlvnhtlklsklkllsllyklls*hwmkllkl
qidvlmqwnt*lnqnlkipsvillqswmkvkeksftd*rkfkvkrrki*kqkkhkkkktl
qikqswnqplfiklevxsmmnqkmlnyymkikfi*kk**nkiik*k*kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/                        563   e-160
SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/                        523   e-148
SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/                        523   e-148
SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/                        511   e-144
SSH196 (SSH196Q) /CSM/SS/SSH1-D/SSH196Q.Seq.d/                        496   e-139
SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/                        484   e-136
SLA588 (SLA588Q) /CSM/SL/SLA5-D/SLA588Q.Seq.d/                        482   e-135
SSF460 (SSF460Q) /CSM/SS/SSF4-C/SSF460Q.Seq.d/                        396   e-109
SSB847 (SSB847Q) /CSM/SS/SSB8-B/SSB847Q.Seq.d/                        289   2e-77
SSH679 (SSH679Q) /CSM/SS/SSH6-D/SSH679Q.Seq.d/                        214   1e-54

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   276   0.0    6
BI506390|BI506390.1 BB170024A20D04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20D04 5', mRNA sequence.    60   3e-07  2
AZ540512|AZ540512.1 ENTDE86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56   2e-06  2
BH161600|BH161600.1 ENTRO33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56   2e-06  2
AZ675358|AZ675358.1 ENTKR86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56   2e-06  2
AW570895|AW570895.1 ra12e05.y1 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;contains Alu repetitive element;, mRNA sequence.    60   3e-05  1
AC087843|AC087843.2 Bos taurus clone RP42-550C12, complete sequence.    44   2e-04  2
AC137651|AC137651.2 Bos taurus clone RP42-224I3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   2e-04  2
AZ549272|AZ549272.1 ENTEP18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    56   5e-04  1
AW588730|AW588730.1 ra03h09.y2 Bird-Rao Meloidogyne incognita J2 Meloidogyne incognita cDNA 5' similar to WP:F55H2.2 CE00209 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT D ;, mRNA sequence.    52   0.008  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK003446_1(AK003446|pid:none) Mus musculus 18-day embryo whole b...   116   3e-25
AK146129_1(AK146129|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...   116   3e-25
(Q5RCS8) RecName: Full=V-type proton ATPase subunit D;          ...   116   4e-25
BC031002_1(BC031002|pid:none) Homo sapiens ATPase, H+ transporti...   116   4e-25
EF082588_1(EF082588|pid:none) Picea sitchensis clone WS02718_N13...   114   1e-24
(P39942) RecName: Full=V-type proton ATPase subunit D;          ...   114   2e-24
AK150981_1(AK150981|pid:none) Mus musculus bone marrow macrophag...   114   2e-24
BT081771_1(BT081771|pid:none) Rana catesbeiana clone rcat-evr-50...   114   2e-24
BT079344_1(BT079344|pid:none) Esox lucius clone eluc-evq-534-179...   113   3e-24
AL928824_3(AL928824|pid:none) Zebrafish DNA sequence from clone ...   112   4e-24

 psg: 0.88  gvh: 0.45  alm: 0.38  top: 0.47  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSD517 is cyt

>SSD517Z.Seq
----------TTGAGAAAATCTCTGAAGGTGTCGTAAGCAATTCACAAGAACTTACTGTT
CTTTCAAAAGGTGGTCAACAAATTAATAAATCTCGTGAATCACACATTAAAGCTGTCGAA
GCTTAAATTGCTCTCGCTTCTTTACAAACTGCTTTCATAACATTGGATGAAGTTATTAAA
ATTACAAATAGACGTGTTAATGCAATGGAATACGTAGTTAAACCAAAACTTGAAAATACC
ATCAGTTATATTATTACAGAGTTGGATGAAAGTGAAAGAGAAGAGTTTTACAGATTGAAG
AAAGTTCAAGGTAAAAAGAAGAAAGATTTGAAAGCAAAAGAAGCACAAAAAGAAGAAAAC
TCTGCAAATAAAACAATCATGGAACCAGCCTCTGTTCATAAAGTTAGAAGTCTNATCGAT
GATGAACCAGAAGATGCTGAATTATTATATGAAGATTAAATTTATTTAAAAAAAATAATA
AAATAAAATAATAAAATAAAAATAAAAAAAAAAAAAAAAA