>SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/
XXXXXXXXXXGATGGTAGAACATTTAATTTACAAATTTGGGATACAGCAGGACAAGAAAG
ATTTAGAACAATTANATTATCTTTTAANAGAGGAGCACAGGGCGTTTTAGTTTGTTAGGA
CGTAACAGATCAACTTACATATAANAACGTTAGATNATGGATGCAAGAAATTCAAAGATA
TGCAGTACTGGGCGTTAGTAGAGTTTTAGTTGGAAACAAATGCGATCTCGAAGATAGAAA
ATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATTCCATTCATGGA
AGCTTCTGCTGCAACTGGTGTNAATGTTGAAGAGGCTTTCATGGCAATGGCAAATGAAAT
TTATAGAAATNATATGGGTGGTTCAAAACCTTCTGTTGTAAACCCAGGAAGTGGAGGTAC
CAGTAACACTGGTGGTAAAAAAAAATTTTGTTAAT

---grtfnlqiwdtagqerfrtixlsfxrgaqgvlvc*DVTDQLTYXNVRXWMQEIQRYA
VLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIY
RNXMGGSKPSVVNPGSGGTSNTGGKKKFC*

Frame A:
---mvehliykfgiqqdkkdleqlxyllxeehraf*fvrt*qinlhixtldxgckkfkdm
qywalvef*letnaiskienw*thqlqenmpivlvfhswklllqlvxmlkrlswqwqmkf
iexiwvvqnlll*tqevevpvtlvvkknfvn


Frame B:
---w*ni*ftnlgysrtrki*nnxiif*xrstgrfsllgrnrstyi*xr*xmdarnskic
stgr**sfswkqmrsrr*kigkhinckricr*swysihgsfccnwcxc*rgfhgngk*nl
*kxygwfktfcckprkwryq*hww*kkill


Frame C:
---grtfnlqiwdtagqerfrtixlsfxrgaqgvlvc*DVTDQLTYXNVRXWMQEIQRYA
VLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIY
RNXMGGSKPSVVNPGSGGTSNTGGKKKFC*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/                        809   0.0
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/                        769   0.0
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/                        769   0.0
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/                        769   0.0
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/                        644   0.0
SSL425 (SSL425Q) /CSM/SS/SSL4-B/SSL425Q.Seq.d/                        593   e-169
SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/                        573   e-163
VSD572 (VSD572Q) /CSM/VS/VSD5-C/VSD572Q.Seq.d/                        525   e-148
SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/                        466   e-130
SSG849 (SSG849Q) /CSM/SS/SSG8-C/SSG849Q.Seq.d/                        440   e-123

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.    86   2e-15  2
CF479278|CF479278.1 RTWW3_23_A07.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_23_A07_A022 3', mRNA sequence.    70   9e-10  2
CF392527|CF392527.1 RTDR3_6_A12.g1_A022 Loblolly pine roots recovering from drought DR3 Pinus taeda cDNA clone RTDR3_6_A12_A022 5', mRNA sequence.    70   1e-09  2
BX677852|BX677852.1 Pinus pinaster root EST, clone RN45E11.        70   1e-09  2
BQ655324|BQ655324.1 NXRV092_H08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H08 5' similar to Arabidopsis thaliana sequence At4g17530 ras-related small GTP-binding protein RAB1c see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    70   1e-09  2
BX251926|BX251926.1 Pinus pinaster xylem EST, clone PP057C10.      70   1e-09  2
CK442575|CK442575.1 GQ0013d.TB.1_D08 GQ001: Male strobili developmental sequence Picea glauca cDNA clone GQ0013d_D08 3', mRNA sequence.    70   1e-09  2
CF477069|CF477069.1 RTWW3_5_D10.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_5_D10_A022 5', mRNA sequence.    70   1e-09  2
CF478182|CF478182.1 RTWW3_19_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_19_A12_A022 5', mRNA sequence.    70   1e-09  2
CF477019|CF477019.1 RTWW3_5_D10.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_5_D10_A022 3', mRNA sequence.    70   1e-09  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E92) RecName: Full=Ras-related protein RabG1;                     226   2e-58
(P34140) RecName: Full=Ras-related protein Rab-1B;                    162   3e-39
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3...   155   5e-37
(P22125) RecName: Full=Ras-related protein ORAB-1;  &M38393_1(M3...   154   9e-37
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...   154   1e-36
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ...   153   2e-36
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039...   152   3e-36
AC183496_25(AC183496|pid:none) Brassica oleracea, *** SEQUENCING...   152   3e-36
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342...   151   6e-36
(Q05974) RecName: Full=Ras-related protein Rab-1A;  &S38339(S383...   151   6e-36

 psg: 0.75  gvh: 0.39  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSD504 is nuc

>SSD504Z.Seq
----------GATGGTAGAACATTTAATTTACAAATTTGGGATACAGCAGGACAAGAAAG
ATTTAGAACAATTANATTATCTTTTAANAGAGGAGCACAGGGCGTTTTAGTTTGTTAGGA
CGTAACAGATCAACTTACATATAANAACGTTAGATNATGGATGCAAGAAATTCAAAGATA
TGCAGTACTGGGCGTTAGTAGAGTTTTAGTTGGAAACAAATGCGATCTCGAAGATAGAAA
ATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATTCCATTCATGGA
AGCTTCTGCTGCAACTGGTGTNAATGTTGAAGAGGCTTTCATGGCAATGGCAAATGAAAT
TTATAGAAATNATATGGGTGGTTCAAAACCTTCTGTTGTAAACCCAGGAAGTGGAGGTAC
CAGTAACACTGGTGGTAAAAAAAAATTTTGTTAAT