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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD492
Library SS
(Link to library)
Clone ID SSD492
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11368-1
Original site URL
Representative seq. ID SSD492E
(Link to Original site)
Representative DNA sequence 
>SSD492 (SSD492Q) /CSM/SS/SSD4-D/SSD492Q.Seq.d/
CTGAACTATTGGATCAATCATGGAATAAGGATTCATTGAAATTTAAATCACCAAATGTTA
TAGAAATGATCAATAGGGCAAATAAATTCTCATTTTGGGTTTCTTCACAAATTCTTTGGC
AAGAAGATATTGAAGAGCGTGTTAAAGTATTTGAAAAGTTCATTTTAATCTCAAAATATC
TAAGAGAAATGAATAATTTCAATACTTTGTTAGCCATTTTCACAGGTTTAAATACTGCAC
CTATCCTAAGATTAAAGAAAACCTTTGCTTTGTTATCTCCAAATTCTTTATCGATTTATA
ATAGTTTGGAGAAATTAATGAATTCAAGTGGTTCTTATAAAAACTACAGAAGTGTTTCAA
AAAATCCACCATTACTTCCTTATTTACCTGTTATCCTTTCCGATCTAACTTTTATGGAAG
ATGGTAATCCCGATAAAATAAATAATCTAATCAATTTCCAAAAGAGAGAACTCATTTGTA
GAGTAATTTCAGAGGTTCAACAATGTCAACAACAAACAAAATATGAATTCCCTGTGGTTG
AACCAATTCATACTCTTCTCACTGAATTACCTTCTTCAACTCCTTCTGAATTATATCAAC
TCTCTTTAATTCGTGAACCAAGAGAAACTAATCAATCAAATGCAAATAGTTCAATTTCTT
CTGGTTCAAACTTTTTATCAAATTCTTCAAATCATAATATTGGTAATAATAATGGTTTTG
ATACTTTAAAAAAATATTATAAGAGTAGTAATAATAATTAATTATTAA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
ELLDQSWNKDSLKFKSPNVIEMINRANKFSFWVSSQILWQEDIEERVKVFEKFILISKYL
REMNNFNTLLAIFTGLNTAPILRLKKTFALLSPNSLSIYNSLEKLMNSSGSYKNYRSVSK
NPPLLPYLPVILSDLTFMEDGNPDKINNLINFQKRELICRVISEVQQCQQQTKYEFPVVE
PIHTLLTELPSSTPSELYQLSLIREPRETNQSNANSSISSGSNFLSNSSNHNIGNNNGFD
TLKKYYKSSNNN*ll
Translated Amino Acid sequence (All Frames) 
Frame A:
lnywinhgirih*nlnhqml*k*sigqinshfgflhkffgkkilksvlkylkssf*sqni
*ek*iisilc*pfsqv*ilhls*d*rkpllcylqilyrfiivwrn**iqvvlikttevfq
kihhyfliyllsfpi*llwkmvipik*ii*siskrensfve*fqrfnnvnnkqnmnslwl
nqfilfslnyllqlllnyinsl*fvnqeklinqmqivqfllvqtfyqilqiiilviimvl
il*kniirvviiiny*


Frame B:
*tigsime*gfiei*itkcyrndq*gk*ililgfftnslarry*rac*si*kvhfnlkis
krne*fqyfvshfhrfkyctypkikenlcfviskffidl**fgeinefkwfl*klqkcfk
kstitslftcypfrsnfygrw*sr*nk*snqfpkerthl*snfrgstmsttnki*ipcg*
tnsyssh*itffnsf*iistlfns*tkrn*sikck*fnffwfklfikffks*yw***wf*
yfkkil*e****lii


Frame C:
ELLDQSWNKDSLKFKSPNVIEMINRANKFSFWVSSQILWQEDIEERVKVFEKFILISKYL
REMNNFNTLLAIFTGLNTAPILRLKKTFALLSPNSLSIYNSLEKLMNSSGSYKNYRSVSK
NPPLLPYLPVILSDLTFMEDGNPDKINNLINFQKRELICRVISEVQQCQQQTKYEFPVVE
PIHTLLTELPSSTPSELYQLSLIREPRETNQSNANSSISSGSNFLSNSSNHNIGNNNGFD
TLKKYYKSSNNN*ll
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD492 (SSD492Q) /CSM/SS/SSD4-D/SSD492Q.Seq.d/                       1481   0.0
AHH144 (AHH144Q) /CSM/AH/AHH1-B/AHH144Q.Seq.d/                       1411   0.0
AHQ870 (AHQ870Q) /CSM/AH/AHQ8-C/AHQ870Q.Seq.d/                       1396   0.0
SHF655 (SHF655Q) /CSM/SH/SHF6-C/SHF655Q.Seq.d/                       1392   0.0
VHL616 (VHL616Q) /CSM/VH/VHL6-A/VHL616Q.Seq.d/                         38   0.19
VFI484 (VFI484Q) /CSM/VF/VFI4-D/VFI484Q.Seq.d/                         38   0.19
VFH237 (VFH237Q) /CSM/VF/VFH2-B/VFH237Q.Seq.d/                         38   0.19
SLG210 (SLG210Q) /CSM/SL/SLG2-A/SLG210Q.Seq.d/                         38   0.19
SFC458 (SFC458Q) /CSM/SF/SFC4-C/SFC458Q.Seq.d/                         38   0.19
FCL-AB19 (FCL-AB19Q) /CSM/FCL/FCL-AB/FCL-AB19Q.Seq.d/                  38   0.19
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AY160106|AY160106.1 Dictyostelium discoideum nucleotide exchange factor RasGEF R (gefR) gene, complete cds.  1441  0.0  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1441  0.0  9
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38  9e-07  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  0.004  13
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds.    40  0.021  3
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38  0.022  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40  0.024  9
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    40  0.058  4
AQ654376|AQ654376.1 Sheared DNA-21I23.TF Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-21I23, DNA sequence.    48  0.16  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    34  0.17  11
dna update 2003. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY160100_1(AY160100|pid:none) Dictyostelium discoideum nucleotid...   181   3e-44
AF474377_1(AF474377|pid:none) Dictyostelium discoideum Ras GTP e...   181   3e-44
AC115682_8(AC115682|pid:none) Dictyostelium discoideum chromosom...   173   5e-42
AY160099_1(AY160099|pid:none) Dictyostelium discoideum nucleotid...   165   1e-39
AY160098_1(AY160098|pid:none) Dictyostelium discoideum nucleotid...   164   4e-39
U53884_1(U53884|pid:none) Dictyostelium discoideum aimless RasGE...   161   2e-38
AY160090_1(AY160090|pid:none) Dictyostelium discoideum nucleotid...   161   2e-38
AC115592_17(AC115592|pid:none) Dictyostelium discoideum chromoso...   159   7e-38
AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani...   149   7e-35
AC117082_5(AC117082|pid:none) Dictyostelium discoideum chromosom...   142   2e-32
protein update 2009. 7. 6
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SSD492 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSD492E
Full length Seq. 
>SSD492E.Seq
CTGAACTATTGGATCAATCATGGAATAAGGATTCATTGAAATTTAAATCACCAAATGTTA
TAGAAATGATCAATAGGGCAAATAAATTCTCATTTTGGGTTTCTTCACAAATTCTTTGGC
AAGAAGATATTGAAGAGCGTGTTAAAGTATTTGAAAAGTTCATTTTAATCTCAAAATATC
TAAGAGAAATGAATAATTTCAATACTTTGTTAGCCATTTTCACAGGTTTAAATACTGCAC
CTATCCTAAGATTAAAGAAAACCTTTGCTTTGTTATCTCCAAATTCTTTATCGATTTATA
ATAGTTTGGAGAAATTAATGAATTCAAGTGGTTCTTATAAAAACTACAGAAGTGTTTCAA
AAAATCCACCATTACTTCCTTATTTACCTGTTATCCTTTCCGATCTAACTTTTATGGAAG
ATGGTAATCCCGATAAAATAAATAATCTAATCAATTTCCAAAAGAGAGAACTCATTTGTA
GAGTAATTTCAGAGGTTCAACAATGTCAACAACAAACAAAATATGAATTCCCTGTGGTTG
AACCAATTCATACTCTTCTCACTGAATTACCTTCTTCAACTCCTTCTGAATTATATCAAC
TCTCTTTAATTCGTGAACCAAGAGAAACTAATCAATCAAATGCAAATAGTTCAATTTCTT
CTGGTTCAAACTTTTTATCAAATTCTTCAAATCATAATATTGGTAATAATAATGGTTTTG
ATACTTTAAAAAAATATTATAAGAGTAGTAATAATAATTAATTATTAA
Length of full length seq. 768