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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD464
Library SS
(Link to library)
Clone ID SSD464
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04863-1
Original site URL
Representative seq. ID SSD464E
(Link to Original site)
Representative DNA sequence 
>SSD464 (SSD464Q) /CSM/SS/SSD4-C/SSD464Q.Seq.d/
CAAATACATATATATATTTTTTTTTTATTTCTAAAAATATTACTTTTATTTTTTTAAAAA
TAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAATAATAAAATAAAAATAATAATAATA
ATAAAATAATAATAATAATAATAATAATAATAATAAAATAATGCAAGATTCTAAATACCA
AGAATTACAAAAACAAGCAGAAAAATCAGTTAAGGAATCAATGACATTATTCCAGGATTG
GCCAAATAAAGGTGTTGGATTTCAAGATATTTCAAATCTATTTTTATGTTATGATAAATT
TTCAGATAGANTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACTTGAAG
CTAGAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGANATTACCAATGATGATGA
TTAGAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATATAAAAAGGAGTA
TGGAACTGATGAATTTGAAGTTCAAGAGAAAGCTTTATCAAAAGTTGTAGTAAAACCTTC
TAAAAAATATCACGTATTAATCATGGACGATATTTTGGCCACTGGTGGTACAATGGCTGC
TTCCATAGAGTTGACAAAAAAAGTATTAATAAATAATGGAATTAAAGATTTCAAAATTTC
AACTTCTCTCATCAGTAGTATTAAAGTATTAAATGGTAAAGAAAAAATTTATGAAAAATA
TAATGATGTCAGTGTTGATATTATAATTGAAATGTAAATAAGAATCAAA
sequence update 1999. 4. 5
Translated Amino Acid sequence 
ntyiyfffisknitfiflkikkkkknkkikk**nknnnnnkiiiiiiiiiik*ckilntk
nyknkqknqlrnq*HYSRIGQIKVLDFKIFQIYFYVMINFQIXYYEHRFSDVDLVVGLEA
RGFILGTAFAQRMXLPMMMIRKKGKLPGPCFRESYIKRSMELMNLKFKRKLYQKL**nll
knity*swtifwplvvqwllp*s*qkky**imelkiskfqllssvvlky*mvkkkfmkni
mmsvlil*lkck*es
Translated Amino Acid sequence (All Frames) 
Frame A:
qihiyifflflkilllff*k*kkkkkikk*knnkikiiiiik**********nnarf*ip
ritktsrkis*gindiipglak*rcwisryfksifml**ifr*ximnidlvmli**wdlk
levsywvqhlhnv*xyq***lerrenyqvhvsvnli*kgvwn**i*ssresfikscsktf
*kisrinhgryfghwwyngcfhrvdkksink*wn*rfqnfnfshq*y*sikw*rknl*ki
**cqc*yyn*nvnknq


Frame B:
kyiyifffyf*kyyfyffknkkkkkk*knkkiik*k*****nnnnnnnnnnkimqdskyq
elqkqaeksvkesmtlfqdwpnkgvgfqdisnlflcydkfsdrxl*t*i**c*fssgt*s
*rfhigysicttyxitnddd*kegkitrsmfp*ilykkeygtdefevqekalskvvvkps
kkyhvlimddilatggtmaasieltkkvlinngikdfkistslissikvlngkekiyeky
ndvsvdiiiem*irik


Frame C:
ntyiyfffisknitfiflkikkkkknkkikk**nknnnnnkiiiiiiiiiik*ckilntk
nyknkqknqlrnq*HYSRIGQIKVLDFKIFQIYFYVMINFQIXYYEHRFSDVDLVVGLEA
RGFILGTAFAQRMXLPMMMIRKKGKLPGPCFRESYIKRSMELMNLKFKRKLYQKL**nll
knity*swtifwplvvqwllp*s*qkky**imelkiskfqllssvvlky*mvkkkfmkni
mmsvlil*lkck*es
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD464 (SSD464Q) /CSM/SS/SSD4-C/SSD464Q.Seq.d/                       1150   0.0
SSA102 (SSA102Q) /CSM/SS/SSA1-A/SSA102Q.Seq.d/                         40   0.049
CFA110 (CFA110Q) /CSM/CF/CFA1-A/CFA110Q.Seq.d/                         40   0.049
VHI702 (VHI702Q) /CSM/VH/VHI7-A/VHI702Q.Seq.d/                         38   0.19
VFO837 (VFO837Q) /CSM/VF/VFO8-B/VFO837Q.Seq.d/                         38   0.19
VFO730 (VFO730Q) /CSM/VF/VFO7-B/VFO730Q.Seq.d/                         38   0.19
VFO520 (VFO520Q) /CSM/VF/VFO5-A/VFO520Q.Seq.d/                         38   0.19
VFO105 (VFO105Q) /CSM/VF/VFO1-A/VFO105Q.Seq.d/                         38   0.19
VFN805 (VFN805Q) /CSM/VF/VFN8-A/VFN805Q.Seq.d/                         38   0.19
VFM695 (VFM695Q) /CSM/VF/VFM6-D/VFM695Q.Seq.d/                         38   0.19
own update 2004. 6. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL360354|AL360354.1 Plasmodium vivax telomeric YAC clone, complete finished sequence.    44  4e-04  7
AL929087|AL929087.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-226M16.    48  0.010  5
AC096502|AC096502.6 Rattus norvegicus clone CH230-160C12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    52  0.010  1
AC110843|AC110843.4 Rattus norvegicus clone CH230-273N15, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  0.012  2
AC112529|AC112529.4 Rattus norvegicus clone CH230-183K5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40  0.013  5
AC123180|AC123180.4 Rattus norvegicus clone CH230-249D12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44  0.021  3
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.024  11
AC094674|AC094674.10 Rattus norvegicus clone CH230-5G2, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44  0.026  5
AC111386|AC111386.4 Rattus norvegicus clone CH230-138O15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  0.026  8
AC097193|AC097193.7 Rattus norvegicus clone CH230-182B21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  0.038  4
dna update 2003. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270259_7(AM270259|pid:none) Aspergillus niger contig An12c0020...    55   1e-15
GN106535_1(GN106535|pid:none) Sequence 11316 from Patent WO20090...    54   1e-15
GN106341_1(GN106341|pid:none) Sequence 11122 from Patent WO20090...    54   3e-15
GN106343_1(GN106343|pid:none) Sequence 11124 from Patent WO20090...    58   4e-15
FN314346_1(FN314346|pid:none) Schistosoma japonicum isolate Anhu...    60   4e-15
FN318702_1(FN318702|pid:none) Schistosoma japonicum isolate Anhu...    60   4e-15
(O42842) RecName: Full=Adenine phosphoribosyltransferase;       ...    51   5e-15
CU633438_373(CU633438|pid:none) Podospora anserina genomic DNA c...    53   6e-15
GN106349_1(GN106349|pid:none) Sequence 11130 from Patent WO20090...    54   8e-15
CR380953_299(CR380953|pid:none) Candida glabrata strain CBS138 c...    52   2e-14
protein update 2009. 7. 6
PSORT 

 psg: 0.69  gvh: 0.52  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSD464 is cyt
5' end seq. ID SSD464F
5' end seq. 
>SSD464F.Seq
CAAATACATATATATATTTTTTTTTTATTTCTAAAAATATTACTTTTATTTTTTTAAAAA
TAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAATAATAAAATAAAAATAATAATAATA
ATAAAATAATAATAATAATAATAATAATAATAATAAAATAATGCAAGATTCTAAATACCA
AGAATTACAAAAACAAGCAGAAAAATCAGTTAAGGAATCAATGACATTATTCCAGGATTG
GCCAAATAAAGGTGTTGGATTTCAAGATATTTCAAATCTATTTTTATGTTATGATAAATT
TTCAGATGTTTTAGATTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACT
TGAAGCTAGAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGATATTACCAATGAT
GATGATTAGAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATA-------
---
Length of 5' end seq. 473
3' end seq. ID SSD464Z
3' end seq. 
>SSD464Z.Seq
----------TAGAGTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACTT
GAAGCTAGAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGAAATTACCAATGATG
ATGATTAGAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATAAAAAGGAG
TATGGAACTGATGAATTTGAAGTTCAAGAGAAAGCTTTATCAAAAGTTGTAGTAAAACCT
TCTAAAAAATATCACGTATTAATCATGGACGATATTTTGGCCACTGGTGGTACAATGGCT
GCTTCCATAGAGTTGACAAAAAAAGTATTAATAAATAATGGAATTAAAGATTTCAAAATT
TCAACTTCTCTCATCAGTAGTATTAAAGTATTAAATGGTAAAGAAAAAATTTATGAAAAA
TATAATGATGTCAGTGTTGATATTATAATTGAAATGTAAATAAGAATCAAAAAAAAAA
Length of 3' end seq. 468
Connected seq. ID SSD464P
Connected seq. 
>SSD464P.Seq
CAAATACATATATATATTTTTTTTTTATTTCTAAAAATATTACTTTTATTTTTTTAAAAA
TAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAATAATAAAATAAAAATAATAATAATA
ATAAAATAATAATAATAATAATAATAATAATAATAAAATAATGCAAGATTCTAAATACCA
AGAATTACAAAAACAAGCAGAAAAATCAGTTAAGGAATCAATGACATTATTCCAGGATTG
GCCAAATAAAGGTGTTGGATTTCAAGATATTTCAAATCTATTTTTATGTTATGATAAATT
TTCAGATGTTTTAGATTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACT
TGAAGCTAGAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGATATTACCAATGAT
GATGATTAGAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATA-------
---TAGAGTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACTTGAAGCTA
GAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGAAATTACCAATGATGATGATTA
GAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATAAAAAGGAGTATGGAA
CTGATGAATTTGAAGTTCAAGAGAAAGCTTTATCAAAAGTTGTAGTAAAACCTTCTAAAA
AATATCACGTATTAATCATGGACGATATTTTGGCCACTGGTGGTACAATGGCTGCTTCCA
TAGAGTTGACAAAAAAAGTATTAATAAATAATGGAATTAAAGATTTCAAAATTTCAACTT
CTCTCATCAGTAGTATTAAAGTATTAAATGGTAAAGAAAAAATTTATGAAAAATATAATG
ATGTCAGTGTTGATATTATAATTGAAATGTAAATAAGAATCAAAAAAAAAA
Length of connected seq. 941
Full length Seq ID SSD464E
Full length Seq. 
>SSD464E.Seq
CAAATACATATATATATTTTTTTTTTATTTCTAAAAATATTACTTTTATTTTTTTAAAAA
TAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAATAATAAAATAAAAATAATAATAATA
ATAAAATAATAATAATAATAATAATAATAATAATAAAATAATGCAAGATTCTAAATACCA
AGAATTACAAAAACAAGCAGAAAAATCAGTTAAGGAATCAATGACATTATTCCAGGATTG
GCCAAATAAAGGTGTTGGATTTCAAGATATTTCAAATCTATTTTTATGTTATGATAAATT
TTCAGATAGANTATTATGAACATAGATTTAGTGATGTTGATTTAGTAGTGGGACTTGAAG
CTAGAGGTTTCATATTGGGTACAGCATTTGCACAACGTATGANATTACCAATGATGATGA
TTAGAAAGAAGGGAAAATTACCAGGTCCATGTTTCCGTGAATCTTATATAAAAAGGAGTA
TGGAACTGATGAATTTGAAGTTCAAGAGAAAGCTTTATCAAAAGTTGTAGTAAAACCTTC
TAAAAAATATCACGTATTAATCATGGACGATATTTTGGCCACTGGTGGTACAATGGCTGC
TTCCATAGAGTTGACAAAAAAAGTATTAATAAATAATGGAATTAAAGATTTCAAAATTTC
AACTTCTCTCATCAGTAGTATTAAAGTATTAAATGGTAAAGAAAAAATTTATGAAAAATA
TAATGATGTCAGTGTTGATATTATAATTGAAATGTAAATAAGAATCAAA
Length of full length seq. 769