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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD460
Library SS
(Link to library)
Clone ID SSD460
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15738-1
Original site URL
Representative seq. ID SSD460P
(Link to Original site)
Representative DNA sequence 
>SSD460 (SSD460Q) /CSM/SS/SSD4-C/SSD460Q.Seq.d/
TATTATTATTTTTAATAATAAAAAATTATTGTTTAAAAAAAAAAAAATAAATAAATTAAT
AAATAAATAAATAAAATGAATATTAAATTTAATTTAATAATTATAATTTTATTCATTTTA
TTTATTTCAAATGTAAATTGTAAAAAAATTAAAAATAAAAAACATTTGACACCCCAAAGG
TTAAGAAGATTTGTTGAACATTCCAAGCCAATTTCATTGAATAAGAAAGTCTGGAAAATT
ACAGAAATTGAAAATATATTTTCCGCCCAAATTGAATTAACATTTGGAATTAGACAAANN
AATATCGTTGAGTTGGAAGATTTCGTGTGGAGAGTTAGTGATCCAAATGATTCATTGTAT
GGAAGTTATAAAACTTTTGAAGAGATTAAAGAATGGGTTAAACCATTGGATGAATCAATT
GATGCTGTAAAGAATTGGTTAATTGAAAATGATATAAATGAATTCACAGTGACAAAAAGC
GGCGATTTCATTCGTACCATTGTTTCTATTGATAAAGCAGAAGAATTACTATCGGTTAGA
TATAATAAAATGGTACATAAATTATCCAAACAATCATTCTTTCGTTCTCTTGATCCTTAC
ACTATTCCAAGAGAACTTTATGATCATATTGATTTCATTGGTGGTGTAAATCATTTACCA
TTATTGTCACCXXXXXXXXXXGGGGGGGTAATTAAAAAGAAGGATGGCAGTATCATTGGT
GATGAAATATCTGGTGGTGGTTTTAGTAACTATTTCTCCCGTCCATGGTATCAAGTGGAT
GAATGTTCTTCCTATATCGAGTGGTTAAACGGTTCTCTCTCTAGTTTCTACAATCAATCT
GGAAGAGGTTTCCCTGATATCTCATCTTTCTCAGAAAATGTCGTTATACTCTACAAAGAC
AAATTGATGCCAATTGGAGGTACTTCTGCATCAGCTCCAATTATTGCCGGCTTATTATCA
TTAATTAACGACCAAAGATTACAAAAAAATCAAAGTCCAATTGGTCTTTTCAATCCATTA
CTTTATAAAATTGCAAGAGATCATCCAAACTCTTTCCTTGATATTGACTTTGGTGAAAAT
AATTATAAATGTTGTACCAATGGTTTTAAATCTAAAAGTGGTTGGGATCCAGTAACTGGT
TTAGGTTTACCAAATTTTGATGAATTGGTTAAATATTGTCTTGAATAAAAA
sequence update 1998. 9.14
Translated Amino Acid sequence 
yyyf***kiiv*kkknk*ink*INKMNIKFNLIIIILFILFISNVNCKKIKNKKHLTPQR
LRRFVEHSKPISLNKKVWKITEIENIFSAQIELTFGIRQXNIVELEDFVWRVSDPNDSLY
GSYKTFEEIKEWVKPLDESIDAVKNWLIENDINEFTVTKSGDFIRTIVSIDKAEELLSVR
YNKMVHKLSKQSFFRSLDPYTIPRELYDHIDFIGGVNHLPLLS---

---GGVIKKKDGSIIGDEISGGGFSNYFSRPWYQVDECSSYIEWLNGSLSSFYNQSGRGF
PDISSFSENVVILYKDKLMPIGGTSASAPIIAGLLSLINDQRLQKNQSPIGLFNPLLYKI
ARDHPNSFLDIDFGENNYKCCTNGFKSKSGWDPVTGLGLPNFDELVKYCLE*k
Translated Amino Acid sequence (All Frames) 
Frame A:
yyyf***kiiv*kkknk*ink*INKMNIKFNLIIIILFILFISNVNCKKIKNKKHLTPQR
LRRFVEHSKPISLNKKVWKITEIENIFSAQIELTFGIRQXNIVELEDFVWRVSDPNDSLY
GSYKTFEEIKEWVKPLDESIDAVKNWLIENDINEFTVTKSGDFIRTIVSIDKAEELLSVR
YNKMVHKLSKQSFFRSLDPYTIPRELYDHIDFIGGVNHLPLLS---

---GGVIKKKDGSIIGDEISGGGFSNYFSRPWYQVDECSSYIEWLNGSLSSFYNQSGRGF
PDISSFSENVVILYKDKLMPIGGTSASAPIIAGLLSLINDQRLQKNQSPIGLFNPLLYKI
ARDHPNSFLDIDFGENNYKCCTNGFKSKSGWDPVTGLGLPNFDELVKYCLE*k

Frame B:
iiifnnkkllfkkkkinklink*ik*ilnli**l*fysfylfqm*ivkklkikni*hpkg
*edllnipsqfh*irksgklqklkiyfppkln*hleldkxislswkiscgelviqmihcm
evikllkrlknglnhwmnqlml*rig*lkmi*mnsq*qkaaisfvplfllikqknyyrld
iikwyinypnnhsfvlliltlfqenfmiilislvv*iiyhych---

---gg*lkrrmavslvmkylvvvlvtispvhgikwmnvlpissg*tvlslvstinleevs
lishlsqkmslystktn*cqlevllhqlqllpayyh*lttkdykkikvqlvfsihyfikl
qeiiqtlsliltlvkiiinvvpmvlnlkvvgiq*lv*vyqilmnwlnivlnk

Frame C:
llfliiknyclkkkk*in**ink*ney*i*fnnynfihfiyfkckl*kn*k*ktfdtpkv
kkic*tfqanfie*eslenyrn*kyifrpn*iniwn*txxyr*vgrfrves**sk*fivw
kl*nf*rd*rmg*tig*in*cckelvn*k*yk*ihsdkkrrfhsyhcfy**srritig*i
**ngt*iiqtiilsfs*slhyskrtl*sy*fhwwcksftiivt---

---ggn*kegwqyhw**niwwwf**lflpsmvssg*mfflyrvvkrfsl*flqsiwkrfp
*yliflrkcrytlqrqidanwryfcissnycrliiin*rpkitkksksnwsfqsitl*nc
krssklfp*y*lw*k*l*mlyqwf*i*kwlgssnwfrftkf**ig*ils*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD460 (SSD460Q) /CSM/SS/SSD4-C/SSD460Q.Seq.d/                        997   0.0
AFA556 (AFA556Q) /CSM/AF/AFA5-C/AFA556Q.Seq.d/                        997   0.0
SSG246 (SSG246Q) /CSM/SS/SSG2-B/SSG246Q.Seq.d/                        950   0.0
SSM365 (SSM365Q) /CSM/SS/SSM3-C/SSM365Q.Seq.d/                        948   0.0
CFC152 (CFC152Q) /CSM/CF/CFC1-C/CFC152Q.Seq.d/                        932   0.0
SFH720 (SFH720Q) /CSM/SF/SFH7-A/SFH720Q.Seq.d/                        872   0.0
CFC388 (CFC388Q) /CSM/CF/CFC3-D/CFC388Q.Seq.d/                        872   0.0
AFE286 (AFE286Q) /CSM/AF/AFE2-D/AFE286Q.Seq.d/                        872   0.0
CHB633 (CHB633Q) /CSM/CH/CHB6-B/CHB633Q.Seq.d/                        819   0.0
SFL146 (SFL146Q) /CSM/SF/SFL1-B/SFL146Q.Seq.d/                        781   0.0
own update 2002.12.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ325867) Dictyostelium discoideum cDNA clone:dda2o13, 5' e...   997   0.0    1
(C92322) Dictyostelium discoideum slug cDNA, clone SSD460.        583   0.0    2
(C89721) Dictyostelium discoideum slug cDNA, clone SSG246.        583   0.0    2
(AU039084) Dictyostelium discoideum slug cDNA, clone SSM365.      583   0.0    2
(BJ360328) Dictyostelium discoideum cDNA clone:ddc5g13, 5' e...   932   0.0    1
(BJ342199) Dictyostelium discoideum cDNA clone:dda9k22, 3' e...   583   0.0    3
(BJ374033) Dictyostelium discoideum cDNA clone:ddc5p21, 3' e...   583   0.0    3
(BJ373953) Dictyostelium discoideum cDNA clone:ddc5g13, 3' e...   583   0.0    3
(BJ402281) Dictyostelium discoideum cDNA clone:dds16h05, 3' ...   583   0.0    3
(BJ340556) Dictyostelium discoideum cDNA clone:dda2o13, 3' e...   583   0.0    3
dna update 2009. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1;          Short=T...   369   e-100
AK293518_1(AK293518|pid:none) Homo sapiens cDNA FLJ59472 complet...   142   2e-32
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family...   127   8e-28
AJ585109_1(AJ585109|pid:none) Aspergillus fumigatus mRNA for fuS...   113   1e-23
BC068900_1(BC068900|pid:none) Xenopus laevis hypothetical protei...   112   2e-23
AC116960_13(AC116960|pid:none) Dictyostelium discoideum chromoso...   109   2e-22
AP007157_241(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...   108   3e-22
AB084899_1(AB084899|pid:none) Aspergillus oryzae aorO gene for a...   107   6e-22
(Q8NK92) RecName: Full=Aorsin;          EC=3.4.21.-; Flags: Prec...   107   6e-22
BC135587_1(BC135587|pid:none) Xenopus tropicalis hypothetical pr...   107   1e-21
protein update 2009. 6.10
PSORT 

 psg: 1.02  gvh: 0.76  alm: 0.38  top: 0.83  tms: 0.00  mit: 0.45  mip: 0.08
 nuc: 0.11  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SSD460 is mit
5' end seq. ID SSD460F
5' end seq. 
>SSD460F.Seq
TATTATTATTTTTAATAATAAAAAATTATTGTTTAAAAAAAAAAAAATAAATAAATTAAT
AAATAAATAAATAAAATGAATATTAAATTTAATTTAATAATTATAATTTTATTCATTTTA
TTTATTTCAAATGTAAATTGTAAAAAAATTAAAAATAAAAAACATTTGACACCCCAAAGG
TTAAGAAGATTTGTTGAACATTCCAAGCCAATTTCATTGAATAAGAAAGTCTGGAAAATT
ACAGAAATTGAAAATATATTTTCCGCCCAAATTGAATTAACATTTGGAATTAGACAAANN
AATATCGTTGAGTTGGAAGATTTCGTGTGGAGAGTTAGTGATCCAAATGATTCATTGTAT
GGAAGTTATAAAACTTTTGAAGAGATTAAAGAATGGGTTAAACCATTGGATGAATCAATT
GATGCTGTAAAGAATTGGTTAATTGAAAATGATATAAATGAATTCACAGTGACAAAAAGC
GGCGATTTCATTCGTACCATTGTTTCTATTGATAAAGCAGAAGAATTACTATCGGTTAGA
TATAATAAAATGGTACATAAATTATCCAAACAATCATTCTTTCGTTCTCTTGATCCTTAC
ACTATTCCAAGAGAACTTTATGATCATATTGATTTCATTGGTGGTGTAAATCATTTACCA
TTATTGTCACC----------
Length of 5' end seq. 671
3' end seq. ID SSD460Z
3' end seq. 
>SSD460Z.Seq
----------GGGGGGGTAATTAAAAAGAAGGATGGCAGTATCATTGGTGATGAAATATC
TGGTGGTGGTTTTAGTAACTATTTCTCCCGTCCATGGTATCAAGTGGATGAATGTTCTTC
CTATATCGAGTGGTTAAACGGTTCTCTCTCTAGTTTCTACAATCAATCTGGAAGAGGTTT
CCCTGATATCTCATCTTTCTCAGAAAATGTCGTTATACTCTACAAAGACAAATTGATGCC
AATTGGAGGTACTTCTGCATCAGCTCCAATTATTGCCGGCTTATTATCATTAATTAACGA
CCAAAGATTACAAAAAAATCAAAGTCCAATTGGTCTTTTCAATCCATTACTTTATAAAAT
TGCAAGAGATCATCCAAACTCTTTCCTTGATATTGACTTTGGTGAAAATAATTATAAATG
TTGTACCAATGGTTTTAAATCTAAAAGTGGTTGGGATCCAGTAACTGGTTTAGGTTTACC
AAATTTTGATGAATTGGTTAAATATTGTCTTGAATAAAAA
Length of 3' end seq. 510
Connected seq. ID SSD460P
Connected seq. 
>SSD460P.Seq
TATTATTATTTTTAATAATAAAAAATTATTGTTTAAAAAAAAAAAAATAAATAAATTAAT
AAATAAATAAATAAAATGAATATTAAATTTAATTTAATAATTATAATTTTATTCATTTTA
TTTATTTCAAATGTAAATTGTAAAAAAATTAAAAATAAAAAACATTTGACACCCCAAAGG
TTAAGAAGATTTGTTGAACATTCCAAGCCAATTTCATTGAATAAGAAAGTCTGGAAAATT
ACAGAAATTGAAAATATATTTTCCGCCCAAATTGAATTAACATTTGGAATTAGACAAANN
AATATCGTTGAGTTGGAAGATTTCGTGTGGAGAGTTAGTGATCCAAATGATTCATTGTAT
GGAAGTTATAAAACTTTTGAAGAGATTAAAGAATGGGTTAAACCATTGGATGAATCAATT
GATGCTGTAAAGAATTGGTTAATTGAAAATGATATAAATGAATTCACAGTGACAAAAAGC
GGCGATTTCATTCGTACCATTGTTTCTATTGATAAAGCAGAAGAATTACTATCGGTTAGA
TATAATAAAATGGTACATAAATTATCCAAACAATCATTCTTTCGTTCTCTTGATCCTTAC
ACTATTCCAAGAGAACTTTATGATCATATTGATTTCATTGGTGGTGTAAATCATTTACCA
TTATTGTCACC----------GGGGGGGTAATTAAAAAGAAGGATGGCAGTATCATTGGT
GATGAAATATCTGGTGGTGGTTTTAGTAACTATTTCTCCCGTCCATGGTATCAAGTGGAT
GAATGTTCTTCCTATATCGAGTGGTTAAACGGTTCTCTCTCTAGTTTCTACAATCAATCT
GGAAGAGGTTTCCCTGATATCTCATCTTTCTCAGAAAATGTCGTTATACTCTACAAAGAC
AAATTGATGCCAATTGGAGGTACTTCTGCATCAGCTCCAATTATTGCCGGCTTATTATCA
TTAATTAACGACCAAAGATTACAAAAAAATCAAAGTCCAATTGGTCTTTTCAATCCATTA
CTTTATAAAATTGCAAGAGATCATCCAAACTCTTTCCTTGATATTGACTTTGGTGAAAAT
AATTATAAATGTTGTACCAATGGTTTTAAATCTAAAAGTGGTTGGGATCCAGTAACTGGT
TTAGGTTTACCAAATTTTGATGAATTGGTTAAATATTGTCTTGAATAAAAA
Length of connected seq. 1181
Full length Seq ID -
Full length Seq. -
Length of full length seq. -