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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSD459
Library SS
(Link to library)
Clone ID SSD459
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SSD459Z
(Link to Original site)
Representative DNA sequence 
>SSD459 (SSD459Q) /CSM/SS/SSD4-C/SSD459Q.Seq.d/
XXXXXXXXXXTCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTC
AGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTC
CCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAAC
TGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGG
TCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGA
ATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAA
AAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAA
GAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAA
AATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAA
TAAAAATAAAAATAATAATTTCTAATTGTATAAAATAAAAAAAA
sequence update 1997.10. 3
Translated Amino Acid sequence 
---DIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTE
LDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKN
SWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knk
nknnnf*lykikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lilvqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlql
nwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslk
ihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcfsikki
kikiiisncik*kk


Frame B:
---*ywcnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*
igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*k
fmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nvfllkk*
k*k**fliv*nkk


Frame C:
---DIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTE
LDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKN
SWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemffy*knk
nknnnf*lykikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                       1037   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                       1037   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                       1037   0.0
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                       1037   0.0
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                       1037   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                       1037   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1037   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                       1037   0.0
SSG787 (SSG787Q) /CSM/SS/SSG7-D/SSG787Q.Seq.d/                       1037   0.0
SSG528 (SSG528Q) /CSM/SS/SSG5-B/SSG528Q.Seq.d/                       1037   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1035   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.     1035   0.0    1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.     1035   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.     1035   0.0    1
(AU039554) Dictyostelium discoideum slug cDNA, clone SLE742.     1035   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.     1035   0.0    1
(AU039170) Dictyostelium discoideum slug cDNA, clone SSM471.     1035   0.0    1
(AU034279) Dictyostelium discoideum slug cDNA, clone SLC437.     1035   0.0    1
(AU033994) Dictyostelium discoideum slug cDNA, clone SLB708.     1035   0.0    1
(AU033951) Dictyostelium discoideum slug cDNA, clone SLB650.     1035   0.0    1
dna update 2009. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   294   1e-78
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   155   1e-36
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   155   1e-36
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   140   2e-32
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ...   139   7e-32
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   138   9e-32
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   138   9e-32
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   138   1e-31
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...   137   2e-31
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae...   136   5e-31
protein update 2009. 6.10
PSORT 

 psg: 0.81  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSD459 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSD459Z
3' end seq. 
>SSD459Z.Seq
----------TCTGATATTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTC
AGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTC
CCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAAC
TGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGG
TCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGA
ATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAA
AAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGAAA
GAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTAGATTTATGGTTCCAA
AATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTTTTTCTATTAAAAAAA
TAAAAATAAAAATAATAATTTCTAATTGTATAAAATAAAAAAAA
Length of 3' end seq. 574
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -